Strain Fitness in Marinobacter adhaerens HP15 around HP15_2901

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2899 and HP15_2900 are separated by 132 nucleotidesHP15_2900 and HP15_2901 are separated by 126 nucleotidesHP15_2901 and HP15_2902 overlap by 4 nucleotides HP15_2899: HP15_2899 - rhodanese sulfurtransferase, at 3,035,584 to 3,036,606 _2899 HP15_2900: HP15_2900 - DSBA oxidoreductase, at 3,036,739 to 3,037,470 _2900 HP15_2901: HP15_2901 - 2-nitropropane dioxygenase NPD, at 3,037,597 to 3,038,571 _2901 HP15_2902: HP15_2902 - methyl-accepting chemotaxis protein, at 3,038,568 to 3,040,508 _2902 Position (kb) 3037 3038 3039Strain fitness (log2 ratio) -2 -1 0 1 2at 3036.643 kb on + strandat 3036.727 kb on + strandat 3036.884 kb on + strand, within HP15_2900at 3037.139 kb on + strand, within HP15_2900at 3037.159 kb on - strand, within HP15_2900at 3037.561 kb on - strandat 3037.756 kb on - strand, within HP15_2901at 3037.853 kb on + strand, within HP15_2901at 3037.885 kb on - strand, within HP15_2901at 3038.124 kb on - strand, within HP15_2901at 3038.146 kb on + strand, within HP15_2901at 3038.154 kb on - strand, within HP15_2901at 3038.159 kb on - strand, within HP15_2901at 3038.184 kb on - strand, within HP15_2901at 3038.202 kb on - strand, within HP15_2901at 3038.276 kb on - strand, within HP15_2901at 3038.276 kb on - strand, within HP15_2901at 3038.344 kb on - strand, within HP15_2901at 3038.380 kb on - strand, within HP15_2901at 3038.486 kb on - strandat 3038.508 kb on + strandat 3038.653 kb on - strandat 3038.701 kb on - strandat 3038.701 kb on - strandat 3038.721 kb on + strandat 3038.729 kb on - strandat 3038.749 kb on + strandat 3038.757 kb on - strandat 3038.896 kb on - strand, within HP15_2902at 3038.950 kb on + strand, within HP15_2902at 3038.950 kb on + strand, within HP15_2902at 3038.979 kb on + strand, within HP15_2902at 3039.178 kb on - strand, within HP15_2902at 3039.262 kb on + strand, within HP15_2902at 3039.286 kb on + strand, within HP15_2902at 3039.316 kb on - strand, within HP15_2902at 3039.326 kb on - strand, within HP15_2902at 3039.358 kb on + strand, within HP15_2902at 3039.520 kb on + strand, within HP15_2902at 3039.547 kb on + strand, within HP15_2902

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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3,036,643 + +0.4
3,036,727 + +1.3
3,036,884 + HP15_2900 0.20 +0.7
3,037,139 + HP15_2900 0.55 +0.6
3,037,159 - HP15_2900 0.57 +0.3
3,037,561 - +0.4
3,037,756 - HP15_2901 0.16 -0.0
3,037,853 + HP15_2901 0.26 -1.5
3,037,885 - HP15_2901 0.30 +0.2
3,038,124 - HP15_2901 0.54 +1.6
3,038,146 + HP15_2901 0.56 +0.1
3,038,154 - HP15_2901 0.57 +0.3
3,038,159 - HP15_2901 0.58 +1.0
3,038,184 - HP15_2901 0.60 -0.4
3,038,202 - HP15_2901 0.62 -0.8
3,038,276 - HP15_2901 0.70 +0.3
3,038,276 - HP15_2901 0.70 -1.5
3,038,344 - HP15_2901 0.77 +0.0
3,038,380 - HP15_2901 0.80 -0.2
3,038,486 - +2.3
3,038,508 + +0.8
3,038,653 - -0.6
3,038,701 - +0.2
3,038,701 - +0.4
3,038,721 + -0.6
3,038,729 - -0.0
3,038,749 + +1.2
3,038,757 - +0.1
3,038,896 - HP15_2902 0.17 +0.7
3,038,950 + HP15_2902 0.20 +1.2
3,038,950 + HP15_2902 0.20 -0.2
3,038,979 + HP15_2902 0.21 +0.2
3,039,178 - HP15_2902 0.31 -0.1
3,039,262 + HP15_2902 0.36 -2.2
3,039,286 + HP15_2902 0.37 -0.6
3,039,316 - HP15_2902 0.39 +0.2
3,039,326 - HP15_2902 0.39 +0.0
3,039,358 + HP15_2902 0.41 -0.1
3,039,520 + HP15_2902 0.49 +0.2
3,039,547 + HP15_2902 0.50 -0.4

Or see this region's nucleotide sequence