Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_271 and HP15_272 are separated by 6 nucleotides HP15_272 and HP15_273 are separated by 178 nucleotides
HP15_271: HP15_271 - transcriptional regulator, AraC family protein, at 261,941 to 262,978
_271
HP15_272: HP15_272 - biosynthetic arginine decarboxylase, at 262,985 to 264,895
_272
HP15_273: HP15_273 - spermidine synthase, at 265,074 to 265,955
_273
Position (kb) 262
263
264
265 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 262.028 kb on - strand at 262.111 kb on + strand, within HP15_271 at 262.111 kb on + strand, within HP15_271 at 262.118 kb on + strand, within HP15_271 at 262.118 kb on + strand, within HP15_271 at 262.118 kb on + strand, within HP15_271 at 262.119 kb on - strand, within HP15_271 at 262.119 kb on - strand, within HP15_271 at 262.119 kb on - strand, within HP15_271 at 262.119 kb on - strand, within HP15_271 at 262.152 kb on - strand, within HP15_271 at 262.189 kb on - strand, within HP15_271 at 262.261 kb on + strand, within HP15_271 at 262.269 kb on - strand, within HP15_271 at 262.353 kb on + strand, within HP15_271 at 262.361 kb on - strand, within HP15_271 at 262.361 kb on - strand, within HP15_271 at 262.385 kb on - strand, within HP15_271 at 262.528 kb on - strand, within HP15_271 at 262.572 kb on + strand, within HP15_271 at 262.619 kb on - strand, within HP15_271 at 262.684 kb on + strand, within HP15_271 at 262.692 kb on - strand, within HP15_271 at 262.777 kb on - strand, within HP15_271 at 262.802 kb on + strand, within HP15_271 at 262.830 kb on + strand, within HP15_271 at 262.838 kb on - strand, within HP15_271 at 262.848 kb on + strand, within HP15_271 at 262.891 kb on - strand at 262.893 kb on - strand at 262.893 kb on - strand at 263.034 kb on - strand at 263.134 kb on - strand at 263.323 kb on - strand, within HP15_272 at 263.323 kb on - strand, within HP15_272 at 263.447 kb on + strand, within HP15_272 at 263.452 kb on + strand, within HP15_272 at 263.627 kb on + strand, within HP15_272 at 263.635 kb on - strand, within HP15_272 at 263.637 kb on - strand, within HP15_272 at 263.641 kb on - strand, within HP15_272 at 263.692 kb on - strand, within HP15_272 at 263.862 kb on + strand, within HP15_272 at 263.890 kb on + strand, within HP15_272 at 263.967 kb on + strand, within HP15_272 at 264.092 kb on + strand, within HP15_272 at 264.092 kb on + strand, within HP15_272 at 264.105 kb on + strand, within HP15_272 at 264.149 kb on + strand, within HP15_272 at 264.167 kb on + strand, within HP15_272 at 264.342 kb on - strand, within HP15_272 at 264.514 kb on + strand, within HP15_272 at 264.629 kb on + strand, within HP15_272 at 264.658 kb on - strand, within HP15_272 at 264.712 kb on - strand at 264.842 kb on + strand at 264.862 kb on - strand at 264.919 kb on - strand at 265.208 kb on - strand, within HP15_273 at 265.301 kb on - strand, within HP15_273 at 265.400 kb on + strand, within HP15_273 at 265.465 kb on + strand, within HP15_273 at 265.524 kb on + strand, within HP15_273 at 265.542 kb on - strand, within HP15_273 at 265.542 kb on - strand, within HP15_273 at 265.707 kb on + strand, within HP15_273 at 265.722 kb on + strand, within HP15_273 at 265.731 kb on - strand, within HP15_273 at 265.734 kb on + strand, within HP15_273 at 265.742 kb on - strand, within HP15_273 at 265.782 kb on + strand, within HP15_273 at 265.789 kb on - strand, within HP15_273 at 265.895 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 262,028 - +0.5 262,111 + HP15_271 0.16 +1.0 262,111 + HP15_271 0.16 +0.2 262,118 + HP15_271 0.17 -0.0 262,118 + HP15_271 0.17 +0.2 262,118 + HP15_271 0.17 -0.3 262,119 - HP15_271 0.17 -3.0 262,119 - HP15_271 0.17 +0.7 262,119 - HP15_271 0.17 +0.4 262,119 - HP15_271 0.17 -0.6 262,152 - HP15_271 0.20 -0.1 262,189 - HP15_271 0.24 +1.0 262,261 + HP15_271 0.31 -0.3 262,269 - HP15_271 0.32 -0.2 262,353 + HP15_271 0.40 -0.4 262,361 - HP15_271 0.40 +0.2 262,361 - HP15_271 0.40 +0.8 262,385 - HP15_271 0.43 +0.0 262,528 - HP15_271 0.57 -0.2 262,572 + HP15_271 0.61 +0.0 262,619 - HP15_271 0.65 -0.1 262,684 + HP15_271 0.72 -0.5 262,692 - HP15_271 0.72 +0.9 262,777 - HP15_271 0.81 -0.6 262,802 + HP15_271 0.83 +0.0 262,830 + HP15_271 0.86 +0.2 262,838 - HP15_271 0.86 -1.5 262,848 + HP15_271 0.87 +0.0 262,891 - -0.5 262,893 - -0.7 262,893 - -0.2 263,034 - -1.1 263,134 - +0.6 263,323 - HP15_272 0.18 +0.2 263,323 - HP15_272 0.18 +1.4 263,447 + HP15_272 0.24 +1.3 263,452 + HP15_272 0.24 +0.9 263,627 + HP15_272 0.34 +0.2 263,635 - HP15_272 0.34 +0.9 263,637 - HP15_272 0.34 +0.0 263,641 - HP15_272 0.34 +0.3 263,692 - HP15_272 0.37 +1.2 263,862 + HP15_272 0.46 +0.8 263,890 + HP15_272 0.47 +1.1 263,967 + HP15_272 0.51 +0.4 264,092 + HP15_272 0.58 +2.2 264,092 + HP15_272 0.58 +1.2 264,105 + HP15_272 0.59 +1.2 264,149 + HP15_272 0.61 +1.3 264,167 + HP15_272 0.62 -0.9 264,342 - HP15_272 0.71 +0.3 264,514 + HP15_272 0.80 +1.3 264,629 + HP15_272 0.86 -0.5 264,658 - HP15_272 0.88 +1.0 264,712 - +1.2 264,842 + +0.7 264,862 - +0.9 264,919 - +0.3 265,208 - HP15_273 0.15 +1.2 265,301 - HP15_273 0.26 +2.3 265,400 + HP15_273 0.37 +0.4 265,465 + HP15_273 0.44 +1.6 265,524 + HP15_273 0.51 +1.5 265,542 - HP15_273 0.53 +0.9 265,542 - HP15_273 0.53 +0.6 265,707 + HP15_273 0.72 +1.8 265,722 + HP15_273 0.73 -0.8 265,731 - HP15_273 0.74 +0.2 265,734 + HP15_273 0.75 +1.3 265,742 - HP15_273 0.76 +1.6 265,782 + HP15_273 0.80 +0.7 265,789 - HP15_273 0.81 +1.0 265,895 + +0.8
Or see this region's nucleotide sequence