Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2047 and HP15_2048 overlap by 4 nucleotides HP15_2048 and HP15_2049 are separated by 9 nucleotides HP15_2049 and HP15_2050 are separated by 20 nucleotides
HP15_2047: HP15_2047 - UDP-glucose 6-dehydrogenase, at 2,145,454 to 2,146,797
_2047
HP15_2048: HP15_2048 - UDP-glucose 4-epimerase, at 2,146,794 to 2,147,822
_2048
HP15_2049: HP15_2049 - cytidine/deoxycytidylate deaminase family protein, at 2,147,832 to 2,148,335
_2049
HP15_2050: HP15_2050 - bifunctional GMP synthase/glutamine amidotransferase protein, at 2,148,356 to 2,149,933
_2050
Position (kb)
2146
2147
2148 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2145.875 kb on + strand, within HP15_2047 at 2146.025 kb on + strand, within HP15_2047 at 2146.186 kb on + strand, within HP15_2047 at 2146.259 kb on - strand, within HP15_2047 at 2146.411 kb on - strand, within HP15_2047 at 2146.441 kb on - strand, within HP15_2047 at 2146.617 kb on + strand, within HP15_2047 at 2146.625 kb on - strand, within HP15_2047 at 2146.676 kb on + strand at 2146.875 kb on - strand at 2146.922 kb on + strand, within HP15_2048 at 2147.059 kb on - strand, within HP15_2048 at 2147.107 kb on + strand, within HP15_2048 at 2147.137 kb on + strand, within HP15_2048 at 2147.197 kb on + strand, within HP15_2048 at 2147.376 kb on - strand, within HP15_2048 at 2147.537 kb on - strand, within HP15_2048 at 2147.537 kb on - strand, within HP15_2048 at 2147.719 kb on + strand, within HP15_2048
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 2,145,875 + HP15_2047 0.31 -3.3 2,146,025 + HP15_2047 0.42 -1.5 2,146,186 + HP15_2047 0.54 -1.7 2,146,259 - HP15_2047 0.60 -1.5 2,146,411 - HP15_2047 0.71 -1.0 2,146,441 - HP15_2047 0.73 -4.4 2,146,617 + HP15_2047 0.87 -1.3 2,146,625 - HP15_2047 0.87 -1.8 2,146,676 + -1.8 2,146,875 - +1.1 2,146,922 + HP15_2048 0.12 -2.5 2,147,059 - HP15_2048 0.26 -2.5 2,147,107 + HP15_2048 0.30 -1.5 2,147,137 + HP15_2048 0.33 -3.1 2,147,197 + HP15_2048 0.39 -2.0 2,147,376 - HP15_2048 0.57 -2.5 2,147,537 - HP15_2048 0.72 -2.2 2,147,537 - HP15_2048 0.72 -0.6 2,147,719 + HP15_2048 0.90 -2.3
Or see this region's nucleotide sequence