Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2040 and HP15_2041 are separated by 120 nucleotides HP15_2041 and HP15_2042 are separated by 30 nucleotides HP15_2042 and HP15_2043 are separated by 18 nucleotides HP15_2043 and HP15_2044 are separated by 25 nucleotides
HP15_2040: HP15_2040 - Holliday junction ATP-dependent DNA helicase RuvB, at 2,139,209 to 2,140,252
_2040
HP15_2041: HP15_2041 - Holliday junction ATP-dependent DNA helicase RuvA, at 2,140,373 to 2,141,002
_2041
HP15_2042: HP15_2042 - crossover junction endodeoxyribonuclease RuvC, at 2,141,033 to 2,141,560
_2042
HP15_2043: HP15_2043 - protein YebC, at 2,141,579 to 2,142,322
_2043
HP15_2044: HP15_2044 - aspartyl-tRNA synthetase, at 2,142,348 to 2,144,156
_2044
Position (kb)
2141
2142 Strain fitness (log2 ratio)
-1
0
1 at 2140.344 kb on + strand at 2140.344 kb on + strand at 2141.021 kb on + strand at 2141.585 kb on - strand at 2141.736 kb on - strand, within HP15_2043 at 2141.874 kb on - strand, within HP15_2043 at 2141.903 kb on + strand, within HP15_2043 at 2142.056 kb on - strand, within HP15_2043 at 2142.219 kb on + strand, within HP15_2043 at 2142.408 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 2,140,344 + -1.5 2,140,344 + +0.9 2,141,021 + +0.1 2,141,585 - -0.6 2,141,736 - HP15_2043 0.21 -0.8 2,141,874 - HP15_2043 0.40 +0.8 2,141,903 + HP15_2043 0.44 -0.0 2,142,056 - HP15_2043 0.64 +0.4 2,142,219 + HP15_2043 0.86 -0.4 2,142,408 - -0.3
Or see this region's nucleotide sequence