Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1811 and HP15_1812 are separated by 71 nucleotides HP15_1812 and HP15_1813 overlap by 14 nucleotides HP15_1813 and HP15_1814 are separated by 205 nucleotides
HP15_1811: HP15_1811 - short-chain dehydrogenase/reductase SDR, at 1,905,399 to 1,906,184
_1811
HP15_1812: HP15_1812 - type IV pilus assembly PilZ, at 1,906,256 to 1,906,699
_1812
HP15_1813: HP15_1813 - conserved hypothetical protein, at 1,906,686 to 1,908,479
_1813
HP15_1814: HP15_1814 - phospho-2-dehydro-3-heoxyheptonate aldolase, at 1,908,685 to 1,909,761
_1814
Position (kb)
1906
1907
1908
1909 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1906.262 kb on - strand at 1906.335 kb on - strand, within HP15_1812 at 1906.594 kb on - strand, within HP15_1812 at 1906.759 kb on + strand at 1906.826 kb on - strand at 1906.831 kb on - strand at 1906.972 kb on + strand, within HP15_1813 at 1907.187 kb on - strand, within HP15_1813 at 1907.221 kb on + strand, within HP15_1813 at 1907.272 kb on - strand, within HP15_1813 at 1907.414 kb on - strand, within HP15_1813 at 1907.494 kb on + strand, within HP15_1813 at 1907.831 kb on - strand, within HP15_1813 at 1907.831 kb on - strand, within HP15_1813 at 1908.095 kb on + strand, within HP15_1813 at 1908.101 kb on - strand, within HP15_1813 at 1908.103 kb on - strand, within HP15_1813 at 1908.103 kb on - strand, within HP15_1813 at 1908.306 kb on + strand at 1908.335 kb on + strand at 1908.343 kb on - strand at 1908.422 kb on + strand at 1908.556 kb on + strand at 1908.615 kb on - strand at 1908.725 kb on + strand at 1908.740 kb on + strand at 1909.222 kb on - strand, within HP15_1814 at 1909.295 kb on + strand, within HP15_1814 at 1909.462 kb on - strand, within HP15_1814
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 1,906,262 - +0.5 1,906,335 - HP15_1812 0.18 -0.2 1,906,594 - HP15_1812 0.76 -0.0 1,906,759 + -0.0 1,906,826 - -0.1 1,906,831 - -0.1 1,906,972 + HP15_1813 0.16 -0.2 1,907,187 - HP15_1813 0.28 -0.2 1,907,221 + HP15_1813 0.30 +0.2 1,907,272 - HP15_1813 0.33 +0.3 1,907,414 - HP15_1813 0.41 +0.7 1,907,494 + HP15_1813 0.45 +0.1 1,907,831 - HP15_1813 0.64 -3.4 1,907,831 - HP15_1813 0.64 +0.4 1,908,095 + HP15_1813 0.79 -1.6 1,908,101 - HP15_1813 0.79 -2.0 1,908,103 - HP15_1813 0.79 -1.3 1,908,103 - HP15_1813 0.79 -0.5 1,908,306 + -0.7 1,908,335 + +0.6 1,908,343 - +1.4 1,908,422 + -0.2 1,908,556 + -2.2 1,908,615 - +0.0 1,908,725 + +0.4 1,908,740 + +0.2 1,909,222 - HP15_1814 0.50 +0.0 1,909,295 + HP15_1814 0.57 -1.9 1,909,462 - HP15_1814 0.72 +0.2
Or see this region's nucleotide sequence