Strain Fitness in Dechlorosoma suillum PS around Dsui_3196

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3194 and Dsui_3195 overlap by 4 nucleotidesDsui_3195 and Dsui_3196 are separated by 130 nucleotidesDsui_3196 and Dsui_3197 are separated by 215 nucleotides Dsui_3194: Dsui_3194 - pseudouridylate synthase I, at 3,428,225 to 3,429,052 _3194 Dsui_3195: Dsui_3195 - Cobalt transport protein, at 3,429,049 to 3,429,678 _3195 Dsui_3196: Dsui_3196 - FimV N-terminal domain protein, at 3,429,809 to 3,432,817 _3196 Dsui_3197: Dsui_3197 - aspartate-semialdehyde dehydrogenase, gamma-proteobacterial, at 3,433,033 to 3,434,166 _3197 Position (kb) 3429 3430 3431 3432 3433Strain fitness (log2 ratio) -3 -2 -1 0 1at 3428.992 kb on + strandat 3428.993 kb on + strandat 3429.012 kb on - strandat 3429.027 kb on - strandat 3429.027 kb on - strandat 3429.066 kb on - strandat 3429.290 kb on - strand, within Dsui_3195at 3429.407 kb on - strandat 3429.431 kb on - strandat 3429.581 kb on + strandat 3429.826 kb on + strandat 3429.897 kb on - strandat 3430.022 kb on - strandat 3430.068 kb on + strandat 3430.377 kb on - strand, within Dsui_3196at 3430.416 kb on + strandat 3430.417 kb on + strand, within Dsui_3196at 3430.482 kb on + strand, within Dsui_3196at 3430.556 kb on - strand, within Dsui_3196at 3430.556 kb on - strand, within Dsui_3196at 3430.604 kb on + strand, within Dsui_3196at 3430.622 kb on + strand, within Dsui_3196at 3430.625 kb on - strand, within Dsui_3196at 3430.653 kb on + strand, within Dsui_3196at 3430.661 kb on + strand, within Dsui_3196at 3430.673 kb on - strand, within Dsui_3196at 3430.960 kb on - strand, within Dsui_3196at 3430.988 kb on - strand, within Dsui_3196at 3430.998 kb on - strand, within Dsui_3196at 3431.034 kb on - strand, within Dsui_3196at 3431.052 kb on + strand, within Dsui_3196at 3431.146 kb on + strand, within Dsui_3196at 3431.357 kb on + strand, within Dsui_3196at 3431.416 kb on + strand, within Dsui_3196at 3431.558 kb on - strand, within Dsui_3196at 3431.772 kb on + strand, within Dsui_3196at 3431.772 kb on + strand, within Dsui_3196at 3431.820 kb on + strand, within Dsui_3196at 3431.827 kb on - strand, within Dsui_3196at 3431.868 kb on - strand, within Dsui_3196at 3431.937 kb on + strand, within Dsui_3196at 3431.940 kb on - strand, within Dsui_3196at 3431.970 kb on + strand, within Dsui_3196at 3432.041 kb on - strand, within Dsui_3196at 3432.119 kb on + strand, within Dsui_3196at 3432.138 kb on + strand, within Dsui_3196at 3432.143 kb on + strand, within Dsui_3196at 3432.171 kb on - strand, within Dsui_3196at 3432.177 kb on + strandat 3432.441 kb on + strand, within Dsui_3196at 3432.442 kb on - strand, within Dsui_3196at 3432.525 kb on + strandat 3432.538 kb on - strandat 3432.538 kb on - strandat 3432.574 kb on + strandat 3432.608 kb on + strandat 3432.657 kb on + strandat 3432.670 kb on - strandat 3432.766 kb on - strandat 3432.792 kb on - strandat 3432.831 kb on + strandat 3432.834 kb on + strandat 3432.885 kb on + strandat 3432.885 kb on + strandat 3432.885 kb on + strandat 3432.893 kb on - strandat 3432.893 kb on - strandat 3432.893 kb on - strandat 3432.893 kb on - strandat 3432.893 kb on - strandat 3432.893 kb on - strandat 3432.893 kb on - strandat 3432.893 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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3,428,992 + +0.5
3,428,993 + -1.0
3,429,012 - -2.0
3,429,027 - -3.2
3,429,027 - -0.6
3,429,066 - -0.5
3,429,290 - Dsui_3195 0.38 -1.5
3,429,407 - -0.5
3,429,431 - +0.5
3,429,581 + -0.5
3,429,826 + +0.5
3,429,897 - -0.0
3,430,022 - -0.2
3,430,068 + -1.5
3,430,377 - Dsui_3196 0.19 -0.3
3,430,416 + -1.0
3,430,417 + Dsui_3196 0.20 -1.8
3,430,482 + Dsui_3196 0.22 +0.5
3,430,556 - Dsui_3196 0.25 -0.1
3,430,556 - Dsui_3196 0.25 -0.2
3,430,604 + Dsui_3196 0.26 -1.5
3,430,622 + Dsui_3196 0.27 +0.5
3,430,625 - Dsui_3196 0.27 -0.2
3,430,653 + Dsui_3196 0.28 +0.5
3,430,661 + Dsui_3196 0.28 -1.5
3,430,673 - Dsui_3196 0.29 -0.2
3,430,960 - Dsui_3196 0.38 +0.0
3,430,988 - Dsui_3196 0.39 -0.2
3,430,998 - Dsui_3196 0.40 +0.1
3,431,034 - Dsui_3196 0.41 +0.3
3,431,052 + Dsui_3196 0.41 -2.5
3,431,146 + Dsui_3196 0.44 -2.6
3,431,357 + Dsui_3196 0.51 -1.0
3,431,416 + Dsui_3196 0.53 +0.5
3,431,558 - Dsui_3196 0.58 +0.2
3,431,772 + Dsui_3196 0.65 -0.5
3,431,772 + Dsui_3196 0.65 -1.5
3,431,820 + Dsui_3196 0.67 -1.0
3,431,827 - Dsui_3196 0.67 +0.2
3,431,868 - Dsui_3196 0.68 +0.2
3,431,937 + Dsui_3196 0.71 +0.5
3,431,940 - Dsui_3196 0.71 +0.3
3,431,970 + Dsui_3196 0.72 -0.5
3,432,041 - Dsui_3196 0.74 +0.0
3,432,119 + Dsui_3196 0.77 -0.5
3,432,138 + Dsui_3196 0.77 -1.0
3,432,143 + Dsui_3196 0.78 +0.5
3,432,171 - Dsui_3196 0.78 +0.3
3,432,177 + +0.5
3,432,441 + Dsui_3196 0.87 +0.5
3,432,442 - Dsui_3196 0.88 +0.4
3,432,525 + -1.0
3,432,538 - +0.3
3,432,538 - +0.3
3,432,574 + -1.5
3,432,608 + +0.5
3,432,657 + -2.8
3,432,670 - +0.3
3,432,766 - +0.1
3,432,792 - +0.1
3,432,831 + -1.8
3,432,834 + -0.5
3,432,885 + +0.5
3,432,885 + -1.8
3,432,885 + -2.5
3,432,893 - -0.3
3,432,893 - +0.0
3,432,893 - -0.0
3,432,893 - +0.0
3,432,893 - +0.1
3,432,893 - +0.0
3,432,893 - +0.1
3,432,893 - +0.1

Or see this region's nucleotide sequence