Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3125 and Dsui_3126 overlap by 4 nucleotides Dsui_3126 and Dsui_3127 are separated by 201 nucleotides Dsui_3127 and Dsui_3128 are separated by 16 nucleotides
Dsui_3125: Dsui_3125 - cytochrome c, mono- and diheme variants family, at 3,346,411 to 3,348,009
_3125
Dsui_3126: Dsui_3126 - heme d1 biosynthesis radical SAM protein NirJ, at 3,348,006 to 3,349,169
_3126
Dsui_3127: Dsui_3127 - 23S RNA-specific pseudouridylate synthase, at 3,349,371 to 3,350,117
_3127
Dsui_3128: Dsui_3128 - ribonuclease R, at 3,350,134 to 3,352,620
_3128
Position (kb)
3348
3349
3350 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3347.108 kb on - strand, within Dsui_3125 at 3347.120 kb on + strand, within Dsui_3125 at 3347.140 kb on - strand, within Dsui_3125 at 3347.193 kb on + strand at 3347.265 kb on + strand, within Dsui_3125 at 3347.274 kb on - strand, within Dsui_3125 at 3347.382 kb on + strand, within Dsui_3125 at 3347.492 kb on + strand, within Dsui_3125 at 3347.765 kb on + strand, within Dsui_3125 at 3347.772 kb on - strand, within Dsui_3125 at 3347.773 kb on - strand, within Dsui_3125 at 3347.991 kb on - strand at 3348.188 kb on + strand at 3348.190 kb on - strand, within Dsui_3126 at 3348.252 kb on + strand, within Dsui_3126 at 3348.269 kb on + strand at 3348.317 kb on + strand, within Dsui_3126 at 3348.381 kb on - strand, within Dsui_3126 at 3348.400 kb on - strand, within Dsui_3126 at 3348.418 kb on - strand, within Dsui_3126 at 3348.461 kb on - strand, within Dsui_3126 at 3348.521 kb on + strand at 3348.599 kb on + strand at 3348.604 kb on + strand, within Dsui_3126 at 3348.607 kb on - strand at 3348.612 kb on - strand, within Dsui_3126 at 3348.668 kb on + strand, within Dsui_3126 at 3348.761 kb on + strand at 3348.769 kb on - strand, within Dsui_3126 at 3348.853 kb on - strand, within Dsui_3126 at 3348.918 kb on - strand, within Dsui_3126 at 3348.923 kb on - strand, within Dsui_3126 at 3348.969 kb on - strand, within Dsui_3126 at 3348.987 kb on + strand, within Dsui_3126 at 3349.054 kb on - strand at 3349.058 kb on + strand at 3349.066 kb on - strand at 3349.085 kb on - strand at 3349.177 kb on + strand at 3349.234 kb on + strand at 3349.234 kb on + strand at 3349.245 kb on - strand at 3349.252 kb on - strand at 3349.336 kb on - strand at 3349.341 kb on + strand at 3349.616 kb on + strand, within Dsui_3127 at 3349.621 kb on + strand, within Dsui_3127 at 3349.778 kb on - strand at 3350.016 kb on - strand, within Dsui_3127 at 3350.065 kb on - strand at 3350.080 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 3,347,108 - Dsui_3125 0.44 +0.6 3,347,120 + Dsui_3125 0.44 -3.1 3,347,140 - Dsui_3125 0.46 +0.6 3,347,193 + +0.6 3,347,265 + Dsui_3125 0.53 -1.4 3,347,274 - Dsui_3125 0.54 -1.0 3,347,382 + Dsui_3125 0.61 -1.4 3,347,492 + Dsui_3125 0.68 -0.4 3,347,765 + Dsui_3125 0.85 -2.4 3,347,772 - Dsui_3125 0.85 -2.0 3,347,773 - Dsui_3125 0.85 -1.8 3,347,991 - -1.0 3,348,188 + +1.6 3,348,190 - Dsui_3126 0.16 +0.6 3,348,252 + Dsui_3126 0.21 -1.4 3,348,269 + +0.6 3,348,317 + Dsui_3126 0.27 -1.0 3,348,381 - Dsui_3126 0.32 -1.0 3,348,400 - Dsui_3126 0.34 -0.4 3,348,418 - Dsui_3126 0.35 -0.4 3,348,461 - Dsui_3126 0.39 -1.4 3,348,521 + +0.6 3,348,599 + +0.6 3,348,604 + Dsui_3126 0.51 +0.6 3,348,607 - +0.6 3,348,612 - Dsui_3126 0.52 -0.4 3,348,668 + Dsui_3126 0.57 -0.4 3,348,761 + -0.4 3,348,769 - Dsui_3126 0.66 -1.8 3,348,853 - Dsui_3126 0.73 +0.6 3,348,918 - Dsui_3126 0.78 +0.6 3,348,923 - Dsui_3126 0.79 -0.4 3,348,969 - Dsui_3126 0.83 -1.4 3,348,987 + Dsui_3126 0.84 -1.0 3,349,054 - -2.6 3,349,058 + -1.0 3,349,066 - -1.4 3,349,085 - -2.0 3,349,177 + -0.4 3,349,234 + +0.6 3,349,234 + -1.4 3,349,245 - -0.4 3,349,252 - -0.4 3,349,336 - -2.3 3,349,341 + -0.6 3,349,616 + Dsui_3127 0.33 -0.1 3,349,621 + Dsui_3127 0.33 -1.0 3,349,778 - +0.6 3,350,016 - Dsui_3127 0.86 -2.9 3,350,065 - +0.6 3,350,080 - -0.4
Or see this region's nucleotide sequence