Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3025 and Dsui_3026 are separated by 110 nucleotides Dsui_3026 and Dsui_3027 overlap by 4 nucleotides Dsui_3027 and Dsui_3028 are separated by 12 nucleotides Dsui_3028 and Dsui_3029 overlap by 4 nucleotides
Dsui_3025: Dsui_3025 - hypothetical protein, at 3,236,864 to 3,237,610
_3025
Dsui_3026: Dsui_3026 - hydrogenase maturation protease, at 3,237,721 to 3,238,218
_3026
Dsui_3027: Dsui_3027 - coenzyme F420-reducing hydrogenase, alpha subunit, at 3,238,215 to 3,239,675
_3027
Dsui_3028: Dsui_3028 - coenzyme F420-reducing hydrogenase, gamma subunit, at 3,239,688 to 3,240,245
_3028
Dsui_3029: Dsui_3029 - NADH:ubiquinone oxidoreductase chain G-like protein, at 3,240,242 to 3,240,955
_3029
Position (kb)
3238
3239
3240 Strain fitness (log2 ratio)
-2
-1
0
1 at 3237.269 kb on - strand, within Dsui_3025 at 3237.311 kb on + strand at 3237.377 kb on + strand at 3237.613 kb on - strand at 3237.823 kb on - strand, within Dsui_3026 at 3237.982 kb on - strand, within Dsui_3026 at 3238.066 kb on - strand, within Dsui_3026 at 3238.228 kb on + strand at 3238.291 kb on - strand at 3238.297 kb on - strand at 3238.524 kb on - strand, within Dsui_3027 at 3238.777 kb on - strand, within Dsui_3027 at 3238.953 kb on - strand, within Dsui_3027 at 3238.978 kb on - strand, within Dsui_3027 at 3238.994 kb on + strand, within Dsui_3027 at 3239.002 kb on - strand, within Dsui_3027 at 3239.034 kb on - strand, within Dsui_3027 at 3239.060 kb on - strand, within Dsui_3027 at 3239.259 kb on - strand, within Dsui_3027 at 3239.417 kb on - strand, within Dsui_3027 at 3239.599 kb on + strand at 3239.600 kb on - strand at 3239.832 kb on - strand, within Dsui_3028 at 3239.913 kb on - strand, within Dsui_3028 at 3239.939 kb on - strand, within Dsui_3028 at 3240.113 kb on - strand, within Dsui_3028 at 3240.364 kb on - strand, within Dsui_3029 at 3240.414 kb on + strand, within Dsui_3029
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 3,237,269 - Dsui_3025 0.54 +0.7 3,237,311 + +0.7 3,237,377 + +0.7 3,237,613 - +0.7 3,237,823 - Dsui_3026 0.20 -1.9 3,237,982 - Dsui_3026 0.52 -0.3 3,238,066 - Dsui_3026 0.69 -1.3 3,238,228 + -0.3 3,238,291 - +0.7 3,238,297 - -0.3 3,238,524 - Dsui_3027 0.21 -0.3 3,238,777 - Dsui_3027 0.38 -0.9 3,238,953 - Dsui_3027 0.51 +0.7 3,238,978 - Dsui_3027 0.52 -1.3 3,238,994 + Dsui_3027 0.53 -1.3 3,239,002 - Dsui_3027 0.54 +0.7 3,239,034 - Dsui_3027 0.56 +0.7 3,239,060 - Dsui_3027 0.58 +0.7 3,239,259 - Dsui_3027 0.71 -0.9 3,239,417 - Dsui_3027 0.82 -0.9 3,239,599 + -0.3 3,239,600 - -0.3 3,239,832 - Dsui_3028 0.26 +0.7 3,239,913 - Dsui_3028 0.40 +0.7 3,239,939 - Dsui_3028 0.45 +0.7 3,240,113 - Dsui_3028 0.76 +0.7 3,240,364 - Dsui_3029 0.17 +0.7 3,240,414 + Dsui_3029 0.24 -0.9
Or see this region's nucleotide sequence