Strain Fitness in Dechlorosoma suillum PS around Dsui_2523

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2521 and Dsui_2522 are separated by 85 nucleotidesDsui_2522 and Dsui_2523 are separated by 142 nucleotidesDsui_2523 and Dsui_2524 are separated by 49 nucleotidesDsui_2524 and Dsui_2525 overlap by 20 nucleotidesDsui_2525 and Dsui_2526 are separated by 191 nucleotides Dsui_2521: Dsui_2521 - cysteine synthase A, at 2,672,738 to 2,673,724 _2521 Dsui_2522: Dsui_2522 - hypothetical protein, at 2,673,810 to 2,673,932 _2522 Dsui_2523: Dsui_2523 - hypothetical protein, at 2,674,075 to 2,674,617 _2523 Dsui_2524: Dsui_2524 - putative conserved small protein, at 2,674,667 to 2,675,002 _2524 Dsui_2525: Dsui_2525 - phage-related protein, at 2,674,983 to 2,675,360 _2525 Dsui_2526: Dsui_2526 - site-specific recombinase, DNA invertase Pin, at 2,675,552 to 2,676,145 _2526 Position (kb) 2674 2675Strain fitness (log2 ratio) -2 -1 0 1at 2673.086 kb on - strand, within Dsui_2521at 2673.102 kb on - strand, within Dsui_2521at 2673.123 kb on - strand, within Dsui_2521at 2673.165 kb on + strand, within Dsui_2521at 2673.166 kb on + strand, within Dsui_2521at 2673.209 kb on - strand, within Dsui_2521at 2673.260 kb on + strand, within Dsui_2521at 2673.268 kb on - strand, within Dsui_2521at 2673.268 kb on - strand, within Dsui_2521at 2673.375 kb on + strand, within Dsui_2521at 2673.431 kb on + strandat 2673.444 kb on - strand, within Dsui_2521at 2673.473 kb on - strand, within Dsui_2521at 2673.489 kb on + strand, within Dsui_2521at 2673.499 kb on + strand, within Dsui_2521at 2673.675 kb on + strandat 2673.675 kb on + strandat 2673.683 kb on - strandat 2673.718 kb on + strandat 2673.718 kb on + strandat 2673.726 kb on - strandat 2673.726 kb on - strandat 2673.726 kb on - strandat 2673.726 kb on - strandat 2673.726 kb on - strandat 2673.726 kb on - strandat 2673.726 kb on - strandat 2673.739 kb on + strandat 2673.749 kb on + strandat 2673.749 kb on + strandat 2673.749 kb on + strandat 2673.749 kb on + strandat 2673.757 kb on - strandat 2673.757 kb on - strandat 2673.757 kb on - strandat 2673.757 kb on - strandat 2673.757 kb on - strandat 2673.830 kb on - strand, within Dsui_2522at 2673.850 kb on + strand, within Dsui_2522at 2673.850 kb on + strand, within Dsui_2522at 2673.911 kb on - strand, within Dsui_2522at 2673.960 kb on + strandat 2673.986 kb on + strandat 2674.132 kb on + strand, within Dsui_2523at 2674.146 kb on + strand, within Dsui_2523at 2674.146 kb on + strand, within Dsui_2523at 2674.183 kb on + strand, within Dsui_2523at 2674.272 kb on + strand, within Dsui_2523at 2674.353 kb on + strand, within Dsui_2523at 2674.366 kb on - strand, within Dsui_2523at 2674.373 kb on + strand, within Dsui_2523at 2674.404 kb on - strand, within Dsui_2523at 2674.503 kb on + strand, within Dsui_2523at 2675.074 kb on - strand, within Dsui_2525at 2675.109 kb on + strand, within Dsui_2525at 2675.151 kb on - strand, within Dsui_2525at 2675.255 kb on - strand, within Dsui_2525at 2675.342 kb on + strandat 2675.350 kb on - strandat 2675.368 kb on + strandat 2675.452 kb on - strandat 2675.546 kb on - strandat 2675.569 kb on - strandat 2675.590 kb on - strandat 2675.593 kb on + strandat 2675.611 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,673,086 - Dsui_2521 0.35 -0.2
2,673,102 - Dsui_2521 0.37 +0.6
2,673,123 - Dsui_2521 0.39 -0.2
2,673,165 + Dsui_2521 0.43 -1.7
2,673,166 + Dsui_2521 0.43 -1.4
2,673,209 - Dsui_2521 0.48 +0.1
2,673,260 + Dsui_2521 0.53 -1.0
2,673,268 - Dsui_2521 0.54 -0.3
2,673,268 - Dsui_2521 0.54 +0.1
2,673,375 + Dsui_2521 0.65 +0.6
2,673,431 + +0.6
2,673,444 - Dsui_2521 0.72 -0.3
2,673,473 - Dsui_2521 0.74 -0.4
2,673,489 + Dsui_2521 0.76 +0.6
2,673,499 + Dsui_2521 0.77 -0.4
2,673,675 + -1.4
2,673,675 + +0.6
2,673,683 - +0.1
2,673,718 + -0.4
2,673,718 + +0.6
2,673,726 - -0.1
2,673,726 - +0.4
2,673,726 - -0.1
2,673,726 - -0.3
2,673,726 - -0.2
2,673,726 - -0.3
2,673,726 - -0.1
2,673,739 + -1.0
2,673,749 + -0.4
2,673,749 + +0.6
2,673,749 + -1.7
2,673,749 + +0.6
2,673,757 - -0.0
2,673,757 - +0.0
2,673,757 - -0.2
2,673,757 - +0.2
2,673,757 - -0.3
2,673,830 - Dsui_2522 0.16 +0.6
2,673,850 + Dsui_2522 0.33 -0.4
2,673,850 + Dsui_2522 0.33 -0.4
2,673,911 - Dsui_2522 0.82 +0.1
2,673,960 + +0.6
2,673,986 + +0.6
2,674,132 + Dsui_2523 0.10 -2.2
2,674,146 + Dsui_2523 0.13 -1.4
2,674,146 + Dsui_2523 0.13 +0.6
2,674,183 + Dsui_2523 0.20 -1.0
2,674,272 + Dsui_2523 0.36 -1.0
2,674,353 + Dsui_2523 0.51 +0.6
2,674,366 - Dsui_2523 0.54 -0.1
2,674,373 + Dsui_2523 0.55 +0.6
2,674,404 - Dsui_2523 0.61 -0.2
2,674,503 + Dsui_2523 0.79 -1.0
2,675,074 - Dsui_2525 0.24 -0.1
2,675,109 + Dsui_2525 0.33 +0.6
2,675,151 - Dsui_2525 0.44 -0.1
2,675,255 - Dsui_2525 0.72 -0.4
2,675,342 + -1.7
2,675,350 - -0.3
2,675,368 + -1.0
2,675,452 - +0.6
2,675,546 - +0.6
2,675,569 - +0.6
2,675,590 - -1.4
2,675,593 + -0.2
2,675,611 - +0.6

Or see this region's nucleotide sequence