Strain Fitness in Dechlorosoma suillum PS around Dsui_2311

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2310 and Dsui_2311 are separated by 40 nucleotidesDsui_2311 and Dsui_2312 are separated by 207 nucleotides Dsui_2310: Dsui_2310 - tRNA 2-selenouridine synthase, at 2,465,925 to 2,467,013 _2310 Dsui_2311: Dsui_2311 - isochorismate hydrolase, at 2,467,054 to 2,467,596 _2311 Dsui_2312: Dsui_2312 - 3-hydroxybutyrate dehydrogenase, at 2,467,804 to 2,468,586 _2312 Position (kb) 2467 2468Strain fitness (log2 ratio) -2 -1 0 1at 2466.148 kb on - strandat 2466.156 kb on + strand, within Dsui_2310at 2466.166 kb on + strand, within Dsui_2310at 2466.319 kb on + strand, within Dsui_2310at 2466.343 kb on + strand, within Dsui_2310at 2466.389 kb on + strand, within Dsui_2310at 2466.528 kb on + strand, within Dsui_2310at 2466.647 kb on + strand, within Dsui_2310at 2466.673 kb on + strand, within Dsui_2310at 2466.827 kb on - strand, within Dsui_2310at 2466.852 kb on + strand, within Dsui_2310at 2466.917 kb on + strandat 2466.946 kb on + strandat 2467.049 kb on + strandat 2467.059 kb on + strandat 2467.064 kb on + strandat 2467.128 kb on + strand, within Dsui_2311at 2467.131 kb on - strandat 2467.169 kb on - strand, within Dsui_2311at 2467.398 kb on - strandat 2467.553 kb on + strandat 2467.563 kb on + strandat 2467.571 kb on - strandat 2467.787 kb on + strandat 2468.130 kb on + strand, within Dsui_2312at 2468.138 kb on + strand, within Dsui_2312at 2468.287 kb on + strand, within Dsui_2312at 2468.319 kb on - strandat 2468.336 kb on - strandat 2468.410 kb on + strand, within Dsui_2312at 2468.410 kb on + strandat 2468.410 kb on + strand, within Dsui_2312at 2468.410 kb on - strandat 2468.410 kb on - strandat 2468.425 kb on + strand, within Dsui_2312at 2468.591 kb on + strandat 2468.596 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,466,148 - +0.7
2,466,156 + Dsui_2310 0.21 -2.1
2,466,166 + Dsui_2310 0.22 -0.3
2,466,319 + Dsui_2310 0.36 -1.5
2,466,343 + Dsui_2310 0.38 -2.0
2,466,389 + Dsui_2310 0.43 -1.1
2,466,528 + Dsui_2310 0.55 +0.2
2,466,647 + Dsui_2310 0.66 +0.7
2,466,673 + Dsui_2310 0.69 +0.7
2,466,827 - Dsui_2310 0.83 -1.7
2,466,852 + Dsui_2310 0.85 -0.3
2,466,917 + -0.3
2,466,946 + -0.9
2,467,049 + +0.0
2,467,059 + +0.2
2,467,064 + -0.9
2,467,128 + Dsui_2311 0.14 -1.3
2,467,131 - -0.9
2,467,169 - Dsui_2311 0.21 -1.9
2,467,398 - -0.3
2,467,553 + -0.9
2,467,563 + +0.7
2,467,571 - -0.3
2,467,787 + -0.3
2,468,130 + Dsui_2312 0.42 -0.9
2,468,138 + Dsui_2312 0.43 -1.9
2,468,287 + Dsui_2312 0.62 -0.9
2,468,319 - +0.7
2,468,336 - -0.3
2,468,410 + Dsui_2312 0.77 -1.9
2,468,410 + +0.7
2,468,410 + Dsui_2312 0.77 -0.9
2,468,410 - +0.7
2,468,410 - -0.9
2,468,425 + Dsui_2312 0.79 -0.9
2,468,591 + +0.7
2,468,596 + -0.9

Or see this region's nucleotide sequence