Strain Fitness in Dechlorosoma suillum PS around Dsui_2028

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2027 and Dsui_2028 are separated by 100 nucleotidesDsui_2028 and Dsui_2029 are separated by 182 nucleotides Dsui_2027: Dsui_2027 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 2,145,500 to 2,147,065 _2027 Dsui_2028: Dsui_2028 - putative endonuclease containing a URI domain, at 2,147,166 to 2,147,462 _2028 Dsui_2029: Dsui_2029 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 2,147,645 to 2,148,565 _2029 Position (kb) 2147 2148Strain fitness (log2 ratio) -1 0 1at 2146.199 kb on + strandat 2146.450 kb on + strand, within Dsui_2027at 2146.541 kb on - strandat 2146.550 kb on + strand, within Dsui_2027at 2146.625 kb on - strandat 2146.659 kb on + strandat 2146.750 kb on - strandat 2146.821 kb on + strand, within Dsui_2027at 2146.879 kb on + strandat 2147.004 kb on - strandat 2147.027 kb on + strandat 2147.027 kb on + strandat 2147.323 kb on + strandat 2147.591 kb on - strandat 2147.603 kb on + strandat 2147.604 kb on - strandat 2147.616 kb on - strandat 2147.641 kb on + strandat 2147.658 kb on - strandat 2147.710 kb on - strandat 2147.967 kb on - strand, within Dsui_2029at 2147.967 kb on - strand, within Dsui_2029at 2148.089 kb on - strand, within Dsui_2029at 2148.428 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,146,199 + +1.0
2,146,450 + Dsui_2027 0.61 -1.0
2,146,541 - -0.6
2,146,550 + Dsui_2027 0.67 -1.0
2,146,625 - -1.0
2,146,659 + +1.0
2,146,750 - +1.0
2,146,821 + Dsui_2027 0.84 -0.6
2,146,879 + -0.0
2,147,004 - -0.0
2,147,027 + +1.0
2,147,027 + -0.6
2,147,323 + +1.0
2,147,591 - +1.0
2,147,603 + -0.6
2,147,604 - -0.6
2,147,616 - -0.0
2,147,641 + -1.4
2,147,658 - -0.6
2,147,710 - +0.4
2,147,967 - Dsui_2029 0.35 -0.6
2,147,967 - Dsui_2029 0.35 -0.0
2,148,089 - Dsui_2029 0.48 -1.0
2,148,428 + +1.0

Or see this region's nucleotide sequence