Strain Fitness in Dechlorosoma suillum PS around Dsui_1637

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1636 and Dsui_1637 are separated by 120 nucleotidesDsui_1637 and Dsui_1638 overlap by 4 nucleotidesDsui_1638 and Dsui_1639 overlap by 1 nucleotides Dsui_1636: Dsui_1636 - poly(3-hydroxyalkanoate) synthetase, at 1,718,521 to 1,720,278 _1636 Dsui_1637: Dsui_1637 - 2-nitropropane dioxygenase-like enzyme, at 1,720,399 to 1,721,562 _1637 Dsui_1638: Dsui_1638 - methyl-accepting chemotaxis protein, at 1,721,559 to 1,722,224 _1638 Dsui_1639: Dsui_1639 - putative flavoprotein, at 1,722,224 to 1,722,964 _1639 Position (kb) 1720 1721 1722Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1719.450 kb on + strand, within Dsui_1636at 1719.458 kb on - strand, within Dsui_1636at 1719.501 kb on + strand, within Dsui_1636at 1719.551 kb on + strand, within Dsui_1636at 1719.559 kb on - strand, within Dsui_1636at 1719.744 kb on + strand, within Dsui_1636at 1719.797 kb on + strand, within Dsui_1636at 1719.824 kb on + strand, within Dsui_1636at 1720.079 kb on + strand, within Dsui_1636at 1720.079 kb on + strand, within Dsui_1636at 1720.178 kb on + strandat 1720.259 kb on + strandat 1720.259 kb on + strandat 1720.654 kb on + strand, within Dsui_1637at 1720.671 kb on + strand, within Dsui_1637at 1720.969 kb on - strand, within Dsui_1637at 1721.136 kb on - strand, within Dsui_1637at 1721.566 kb on - strandat 1721.571 kb on - strandat 1721.588 kb on + strandat 1721.620 kb on + strandat 1721.681 kb on + strand, within Dsui_1638at 1721.681 kb on + strand, within Dsui_1638at 1721.689 kb on - strand, within Dsui_1638at 1721.717 kb on + strand, within Dsui_1638at 1721.773 kb on + strand, within Dsui_1638at 1721.786 kb on + strand, within Dsui_1638at 1721.824 kb on + strand, within Dsui_1638at 1721.858 kb on - strand, within Dsui_1638at 1721.907 kb on - strand, within Dsui_1638at 1722.080 kb on - strand, within Dsui_1638at 1722.178 kb on + strandat 1722.180 kb on + strandat 1722.362 kb on - strand, within Dsui_1639at 1722.479 kb on + strand, within Dsui_1639at 1722.511 kb on + strand, within Dsui_1639

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,719,450 + Dsui_1636 0.53 -1.5
1,719,458 - Dsui_1636 0.53 -1.8
1,719,501 + Dsui_1636 0.56 -0.5
1,719,551 + Dsui_1636 0.59 -0.9
1,719,559 - Dsui_1636 0.59 -1.5
1,719,744 + Dsui_1636 0.70 -2.7
1,719,797 + Dsui_1636 0.73 +0.3
1,719,824 + Dsui_1636 0.74 -0.5
1,720,079 + Dsui_1636 0.89 -1.8
1,720,079 + Dsui_1636 0.89 -0.5
1,720,178 + -1.1
1,720,259 + -0.1
1,720,259 + +0.5
1,720,654 + Dsui_1637 0.22 -2.3
1,720,671 + Dsui_1637 0.23 -0.2
1,720,969 - Dsui_1637 0.49 -1.8
1,721,136 - Dsui_1637 0.63 -3.0
1,721,566 - -1.8
1,721,571 - +0.5
1,721,588 + +0.1
1,721,620 + -0.1
1,721,681 + Dsui_1638 0.18 -0.0
1,721,681 + Dsui_1638 0.18 -0.1
1,721,689 - Dsui_1638 0.20 -0.5
1,721,717 + Dsui_1638 0.24 -0.2
1,721,773 + Dsui_1638 0.32 -0.1
1,721,786 + Dsui_1638 0.34 -0.2
1,721,824 + Dsui_1638 0.40 +0.1
1,721,858 - Dsui_1638 0.45 -2.8
1,721,907 - Dsui_1638 0.52 -4.0
1,722,080 - Dsui_1638 0.78 -1.1
1,722,178 + +0.2
1,722,180 + -0.0
1,722,362 - Dsui_1639 0.19 -1.1
1,722,479 + Dsui_1639 0.34 -0.0
1,722,511 + Dsui_1639 0.39 -0.1

Or see this region's nucleotide sequence