Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1632 and Dsui_1633 are separated by 17 nucleotides Dsui_1633 and Dsui_1634 are separated by 69 nucleotides Dsui_1634 and Dsui_1635 are separated by 117 nucleotides Dsui_1635 and Dsui_1636 are separated by 45 nucleotides
Dsui_1632: Dsui_1632 - hypothetical protein, at 1,715,744 to 1,716,268
_1632
Dsui_1633: Dsui_1633 - Protein of unknown function (DUF3149), at 1,716,286 to 1,716,420
_1633
Dsui_1634: Dsui_1634 - universal stress protein UspA-like protein, at 1,716,490 to 1,716,933
_1634
Dsui_1635: Dsui_1635 - putative exonuclease of the beta-lactamase fold involved in RNA processing, at 1,717,051 to 1,718,475
_1635
Dsui_1636: Dsui_1636 - poly(3-hydroxyalkanoate) synthetase, at 1,718,521 to 1,720,278
_1636
Position (kb)
1717
1718
1719 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1716.228 kb on + strand at 1716.228 kb on + strand at 1716.236 kb on - strand at 1716.276 kb on + strand at 1716.282 kb on + strand at 1716.282 kb on + strand at 1716.290 kb on - strand at 1716.344 kb on + strand, within Dsui_1633 at 1716.344 kb on + strand, within Dsui_1633 at 1716.354 kb on + strand, within Dsui_1633 at 1716.371 kb on + strand, within Dsui_1633 at 1716.422 kb on - strand at 1716.489 kb on - strand at 1716.489 kb on - strand at 1716.501 kb on - strand at 1716.507 kb on - strand at 1716.513 kb on + strand at 1716.523 kb on + strand at 1716.531 kb on - strand at 1716.531 kb on - strand at 1716.531 kb on - strand at 1716.531 kb on - strand at 1716.531 kb on - strand at 1716.540 kb on - strand, within Dsui_1634 at 1716.683 kb on + strand, within Dsui_1634 at 1716.683 kb on + strand, within Dsui_1634 at 1716.683 kb on + strand, within Dsui_1634 at 1716.683 kb on + strand, within Dsui_1634 at 1716.905 kb on + strand at 1716.908 kb on + strand at 1716.913 kb on - strand at 1716.931 kb on + strand at 1716.931 kb on + strand at 1716.986 kb on - strand at 1716.994 kb on + strand at 1717.011 kb on + strand at 1717.035 kb on + strand at 1717.057 kb on + strand at 1717.172 kb on - strand at 1717.211 kb on + strand, within Dsui_1635 at 1717.211 kb on + strand, within Dsui_1635 at 1717.319 kb on - strand, within Dsui_1635 at 1717.356 kb on + strand, within Dsui_1635 at 1717.645 kb on - strand, within Dsui_1635 at 1717.706 kb on - strand, within Dsui_1635 at 1717.764 kb on + strand, within Dsui_1635 at 1717.792 kb on - strand, within Dsui_1635 at 1717.951 kb on - strand, within Dsui_1635 at 1717.976 kb on + strand, within Dsui_1635 at 1718.057 kb on - strand, within Dsui_1635 at 1718.139 kb on - strand, within Dsui_1635 at 1718.191 kb on + strand, within Dsui_1635 at 1718.223 kb on + strand, within Dsui_1635 at 1718.231 kb on - strand, within Dsui_1635 at 1718.317 kb on + strand, within Dsui_1635 at 1718.317 kb on + strand, within Dsui_1635 at 1718.557 kb on - strand at 1718.583 kb on + strand at 1718.600 kb on + strand at 1718.656 kb on - strand at 1718.657 kb on + strand at 1718.845 kb on + strand, within Dsui_1636 at 1718.870 kb on - strand, within Dsui_1636 at 1719.013 kb on - strand, within Dsui_1636 at 1719.036 kb on - strand, within Dsui_1636 at 1719.059 kb on - strand, within Dsui_1636 at 1719.087 kb on + strand, within Dsui_1636 at 1719.163 kb on + strand, within Dsui_1636 at 1719.208 kb on - strand, within Dsui_1636 at 1719.209 kb on + strand, within Dsui_1636 at 1719.217 kb on - strand, within Dsui_1636 at 1719.291 kb on - strand, within Dsui_1636 at 1719.305 kb on + strand, within Dsui_1636 at 1719.313 kb on + strand, within Dsui_1636 at 1719.320 kb on + strand, within Dsui_1636 at 1719.393 kb on - strand, within Dsui_1636 at 1719.395 kb on - strand, within Dsui_1636 at 1719.450 kb on + strand, within Dsui_1636 at 1719.458 kb on - strand, within Dsui_1636
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 1,716,228 + -0.0 1,716,228 + -0.1 1,716,236 - -2.3 1,716,276 + -0.3 1,716,282 + -0.1 1,716,282 + -0.3 1,716,290 - -0.5 1,716,344 + Dsui_1633 0.43 -0.3 1,716,344 + Dsui_1633 0.43 +0.2 1,716,354 + Dsui_1633 0.50 -0.0 1,716,371 + Dsui_1633 0.63 -0.1 1,716,422 - -0.5 1,716,489 - -0.1 1,716,489 - -0.2 1,716,501 - -0.0 1,716,507 - +0.3 1,716,513 + -0.5 1,716,523 + -0.8 1,716,531 - -0.1 1,716,531 - -0.3 1,716,531 - +0.2 1,716,531 - -0.3 1,716,531 - -0.2 1,716,540 - Dsui_1634 0.11 -0.1 1,716,683 + Dsui_1634 0.43 +0.5 1,716,683 + Dsui_1634 0.43 +0.5 1,716,683 + Dsui_1634 0.43 -1.1 1,716,683 + Dsui_1634 0.43 -3.1 1,716,905 + -2.1 1,716,908 + -2.3 1,716,913 - -0.3 1,716,931 + +0.5 1,716,931 + -1.8 1,716,986 - -1.8 1,716,994 + -1.5 1,717,011 + -0.5 1,717,035 + +0.5 1,717,057 + +0.5 1,717,172 - +0.5 1,717,211 + Dsui_1635 0.11 -1.8 1,717,211 + Dsui_1635 0.11 -0.5 1,717,319 - Dsui_1635 0.19 +0.5 1,717,356 + Dsui_1635 0.21 -1.1 1,717,645 - Dsui_1635 0.42 -2.1 1,717,706 - Dsui_1635 0.46 +0.5 1,717,764 + Dsui_1635 0.50 +0.5 1,717,792 - Dsui_1635 0.52 -1.1 1,717,951 - Dsui_1635 0.63 +0.0 1,717,976 + Dsui_1635 0.65 -1.8 1,718,057 - Dsui_1635 0.71 +0.5 1,718,139 - Dsui_1635 0.76 +0.5 1,718,191 + Dsui_1635 0.80 -2.1 1,718,223 + Dsui_1635 0.82 -0.5 1,718,231 - Dsui_1635 0.83 -2.1 1,718,317 + Dsui_1635 0.89 -0.5 1,718,317 + Dsui_1635 0.89 -1.5 1,718,557 - +0.5 1,718,583 + -2.0 1,718,600 + +2.1 1,718,656 - +0.5 1,718,657 + -0.5 1,718,845 + Dsui_1636 0.18 -2.5 1,718,870 - Dsui_1636 0.20 -1.5 1,719,013 - Dsui_1636 0.28 -0.5 1,719,036 - Dsui_1636 0.29 +0.5 1,719,059 - Dsui_1636 0.31 +0.5 1,719,087 + Dsui_1636 0.32 -2.5 1,719,163 + Dsui_1636 0.37 -1.5 1,719,208 - Dsui_1636 0.39 -0.5 1,719,209 + Dsui_1636 0.39 -0.5 1,719,217 - Dsui_1636 0.40 +0.5 1,719,291 - Dsui_1636 0.44 -0.5 1,719,305 + Dsui_1636 0.45 +0.5 1,719,313 + Dsui_1636 0.45 +0.1 1,719,320 + Dsui_1636 0.45 +0.5 1,719,393 - Dsui_1636 0.50 +0.5 1,719,395 - Dsui_1636 0.50 -1.1 1,719,450 + Dsui_1636 0.53 -1.5 1,719,458 - Dsui_1636 0.53 -1.8
Or see this region's nucleotide sequence