Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1606 and Dsui_1607 are separated by 102 nucleotides Dsui_1607 and Dsui_1608 are separated by 63 nucleotides Dsui_1608 and Dsui_1609 are separated by 49 nucleotides
Dsui_1606: Dsui_1606 - periplasmic serine protease, Do/DeqQ family, at 1,689,759 to 1,691,252
_1606
Dsui_1607: Dsui_1607 - putative membrane-associated protein, at 1,691,355 to 1,692,332
_1607
Dsui_1608: Dsui_1608 - hypothetical protein, at 1,692,396 to 1,692,704
_1608
Dsui_1609: Dsui_1609 - Thiopurine S-methyltransferase (TPMT), at 1,692,754 to 1,693,371
_1609
Position (kb)
1691
1692
1693 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1690.394 kb on - strand at 1690.434 kb on - strand, within Dsui_1606 at 1690.711 kb on + strand, within Dsui_1606 at 1690.837 kb on + strand, within Dsui_1606 at 1690.856 kb on + strand, within Dsui_1606 at 1690.997 kb on + strand, within Dsui_1606 at 1691.048 kb on - strand at 1691.208 kb on - strand at 1691.262 kb on + strand at 1691.270 kb on - strand at 1691.324 kb on + strand at 1691.687 kb on + strand, within Dsui_1607 at 1691.783 kb on - strand, within Dsui_1607 at 1691.936 kb on + strand, within Dsui_1607 at 1691.962 kb on - strand, within Dsui_1607 at 1692.391 kb on + strand at 1692.519 kb on - strand at 1692.589 kb on + strand at 1692.658 kb on + strand at 1692.668 kb on + strand at 1692.758 kb on + strand at 1692.849 kb on - strand, within Dsui_1609 at 1692.929 kb on + strand, within Dsui_1609 at 1692.956 kb on + strand, within Dsui_1609 at 1692.985 kb on + strand, within Dsui_1609 at 1692.985 kb on + strand, within Dsui_1609
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 1,690,394 - -0.5 1,690,434 - Dsui_1606 0.45 -2.3 1,690,711 + Dsui_1606 0.64 -0.7 1,690,837 + Dsui_1606 0.72 -0.6 1,690,856 + Dsui_1606 0.73 -0.2 1,690,997 + Dsui_1606 0.83 -0.7 1,691,048 - +0.5 1,691,208 - -1.1 1,691,262 + +0.4 1,691,270 - +0.5 1,691,324 + -0.6 1,691,687 + Dsui_1607 0.34 -2.1 1,691,783 - Dsui_1607 0.44 +0.5 1,691,936 + Dsui_1607 0.59 -2.8 1,691,962 - Dsui_1607 0.62 -0.5 1,692,391 + +0.5 1,692,519 - +0.5 1,692,589 + -0.5 1,692,658 + +0.5 1,692,668 + +0.5 1,692,758 + +0.5 1,692,849 - Dsui_1609 0.15 -0.5 1,692,929 + Dsui_1609 0.28 +0.5 1,692,956 + Dsui_1609 0.33 +0.5 1,692,985 + Dsui_1609 0.37 -1.1 1,692,985 + Dsui_1609 0.37 -1.5
Or see this region's nucleotide sequence