Strain Fitness in Dechlorosoma suillum PS around Dsui_1585

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1583 and Dsui_1584 are separated by 14 nucleotidesDsui_1584 and Dsui_1585 are separated by 122 nucleotidesDsui_1585 and Dsui_1586 are separated by 65 nucleotides Dsui_1583: Dsui_1583 - (4Fe-4S) cluster-containing protein, at 1,660,885 to 1,662,297 _1583 Dsui_1584: Dsui_1584 - hypothetical protein, at 1,662,312 to 1,662,965 _1584 Dsui_1585: Dsui_1585 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,663,088 to 1,664,110 _1585 Dsui_1586: Dsui_1586 - parvulin-like peptidyl-prolyl isomerase, at 1,664,176 to 1,665,489 _1586 Position (kb) 1663 1664 1665Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1662.205 kb on - strandat 1662.231 kb on + strandat 1662.250 kb on + strandat 1662.275 kb on - strandat 1662.296 kb on + strandat 1662.304 kb on - strandat 1662.489 kb on + strand, within Dsui_1584at 1662.797 kb on + strand, within Dsui_1584at 1662.820 kb on + strand, within Dsui_1584at 1664.127 kb on + strandat 1664.182 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,662,205 - -2.5
1,662,231 + -5.3
1,662,250 + -5.9
1,662,275 - +0.5
1,662,296 + -3.0
1,662,304 - -0.5
1,662,489 + Dsui_1584 0.27 -4.7
1,662,797 + Dsui_1584 0.74 -5.1
1,662,820 + Dsui_1584 0.78 -4.5
1,664,127 + -1.6
1,664,182 - -0.5

Or see this region's nucleotide sequence