Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1566 and Dsui_1567 are separated by 14 nucleotides Dsui_1567 and Dsui_1568 are separated by 121 nucleotides Dsui_1568 and Dsui_1569 are separated by 3 nucleotides
Dsui_1566: Dsui_1566 - inositol monophosphatase/fructose-1,6-bisphosphatase family protein, at 1,639,259 to 1,640,071
_1566
Dsui_1567: Dsui_1567 - Peroxiredoxin, at 1,640,086 to 1,640,646
_1567
Dsui_1568: Dsui_1568 - RNA methyltransferase, RsmE family, at 1,640,768 to 1,641,517
_1568
Dsui_1569: Dsui_1569 - polyphosphate:AMP phosphotransferase, at 1,641,521 to 1,643,029
_1569
Position (kb)
1640
1641
1642 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1639.830 kb on - strand, within Dsui_1566 at 1639.867 kb on + strand at 1639.898 kb on + strand, within Dsui_1566 at 1639.927 kb on - strand, within Dsui_1566 at 1639.953 kb on + strand at 1639.961 kb on - strand at 1640.012 kb on + strand at 1640.164 kb on + strand, within Dsui_1567 at 1640.172 kb on - strand, within Dsui_1567 at 1640.247 kb on - strand, within Dsui_1567 at 1640.302 kb on - strand, within Dsui_1567 at 1640.307 kb on - strand at 1640.454 kb on + strand at 1640.462 kb on - strand, within Dsui_1567 at 1640.462 kb on - strand, within Dsui_1567 at 1640.462 kb on - strand, within Dsui_1567 at 1640.464 kb on + strand at 1640.467 kb on - strand, within Dsui_1567 at 1640.478 kb on + strand at 1640.489 kb on + strand at 1640.497 kb on - strand, within Dsui_1567 at 1640.676 kb on - strand at 1640.676 kb on - strand at 1640.676 kb on - strand at 1640.826 kb on + strand at 1640.826 kb on + strand at 1640.834 kb on - strand at 1640.834 kb on - strand at 1640.943 kb on - strand at 1640.956 kb on - strand, within Dsui_1568 at 1641.030 kb on - strand, within Dsui_1568 at 1641.240 kb on - strand, within Dsui_1568 at 1641.613 kb on + strand at 1641.628 kb on + strand at 1641.676 kb on + strand, within Dsui_1569 at 1641.828 kb on - strand at 1641.849 kb on - strand, within Dsui_1569 at 1641.849 kb on - strand at 1641.849 kb on - strand, within Dsui_1569 at 1641.849 kb on - strand at 1641.855 kb on - strand at 1641.879 kb on + strand, within Dsui_1569 at 1641.959 kb on - strand at 1642.035 kb on - strand, within Dsui_1569 at 1642.038 kb on + strand, within Dsui_1569 at 1642.052 kb on + strand, within Dsui_1569 at 1642.138 kb on + strand, within Dsui_1569 at 1642.246 kb on + strand, within Dsui_1569 at 1642.289 kb on + strand, within Dsui_1569 at 1642.291 kb on - strand, within Dsui_1569 at 1642.312 kb on + strand, within Dsui_1569 at 1642.312 kb on + strand, within Dsui_1569 at 1642.312 kb on + strand, within Dsui_1569 at 1642.381 kb on + strand, within Dsui_1569 at 1642.383 kb on + strand, within Dsui_1569 at 1642.484 kb on - strand, within Dsui_1569
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 1,639,830 - Dsui_1566 0.70 -1.2 1,639,867 + +0.5 1,639,898 + Dsui_1566 0.79 -1.5 1,639,927 - Dsui_1566 0.82 -1.6 1,639,953 + +0.5 1,639,961 - -0.5 1,640,012 + -1.5 1,640,164 + Dsui_1567 0.14 +0.5 1,640,172 - Dsui_1567 0.15 -1.4 1,640,247 - Dsui_1567 0.29 -0.3 1,640,302 - Dsui_1567 0.39 +0.7 1,640,307 - +2.1 1,640,454 + -1.8 1,640,462 - Dsui_1567 0.67 -0.2 1,640,462 - Dsui_1567 0.67 +0.3 1,640,462 - Dsui_1567 0.67 +0.3 1,640,464 + +0.5 1,640,467 - Dsui_1567 0.68 -1.6 1,640,478 + +0.5 1,640,489 + -0.5 1,640,497 - Dsui_1567 0.73 -0.2 1,640,676 - -0.7 1,640,676 - -1.2 1,640,676 - +0.2 1,640,826 + -0.2 1,640,826 + +0.2 1,640,834 - -0.5 1,640,834 - -0.5 1,640,943 - +0.5 1,640,956 - Dsui_1568 0.25 +0.5 1,641,030 - Dsui_1568 0.35 +0.5 1,641,240 - Dsui_1568 0.63 -1.8 1,641,613 + -0.5 1,641,628 + +0.1 1,641,676 + Dsui_1569 0.10 -0.6 1,641,828 - +0.5 1,641,849 - Dsui_1569 0.22 -2.1 1,641,849 - +0.5 1,641,849 - Dsui_1569 0.22 -0.5 1,641,849 - +0.5 1,641,855 - -0.5 1,641,879 + Dsui_1569 0.24 +0.5 1,641,959 - +0.5 1,642,035 - Dsui_1569 0.34 -0.5 1,642,038 + Dsui_1569 0.34 -2.6 1,642,052 + Dsui_1569 0.35 +0.9 1,642,138 + Dsui_1569 0.41 -0.3 1,642,246 + Dsui_1569 0.48 -0.4 1,642,289 + Dsui_1569 0.51 -0.9 1,642,291 - Dsui_1569 0.51 -2.6 1,642,312 + Dsui_1569 0.52 -2.6 1,642,312 + Dsui_1569 0.52 -0.8 1,642,312 + Dsui_1569 0.52 +1.1 1,642,381 + Dsui_1569 0.57 -1.3 1,642,383 + Dsui_1569 0.57 -0.2 1,642,484 - Dsui_1569 0.64 +0.5
Or see this region's nucleotide sequence