Strain Fitness in Dechlorosoma suillum PS around Dsui_1568

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1566 and Dsui_1567 are separated by 14 nucleotidesDsui_1567 and Dsui_1568 are separated by 121 nucleotidesDsui_1568 and Dsui_1569 are separated by 3 nucleotides Dsui_1566: Dsui_1566 - inositol monophosphatase/fructose-1,6-bisphosphatase family protein, at 1,639,259 to 1,640,071 _1566 Dsui_1567: Dsui_1567 - Peroxiredoxin, at 1,640,086 to 1,640,646 _1567 Dsui_1568: Dsui_1568 - RNA methyltransferase, RsmE family, at 1,640,768 to 1,641,517 _1568 Dsui_1569: Dsui_1569 - polyphosphate:AMP phosphotransferase, at 1,641,521 to 1,643,029 _1569 Position (kb) 1640 1641 1642Strain fitness (log2 ratio) -2 -1 0 1 2at 1639.830 kb on - strand, within Dsui_1566at 1639.867 kb on + strandat 1639.898 kb on + strand, within Dsui_1566at 1639.927 kb on - strand, within Dsui_1566at 1639.953 kb on + strandat 1639.961 kb on - strandat 1640.012 kb on + strandat 1640.164 kb on + strand, within Dsui_1567at 1640.172 kb on - strand, within Dsui_1567at 1640.247 kb on - strand, within Dsui_1567at 1640.302 kb on - strand, within Dsui_1567at 1640.307 kb on - strandat 1640.454 kb on + strandat 1640.462 kb on - strand, within Dsui_1567at 1640.462 kb on - strand, within Dsui_1567at 1640.462 kb on - strand, within Dsui_1567at 1640.464 kb on + strandat 1640.467 kb on - strand, within Dsui_1567at 1640.478 kb on + strandat 1640.489 kb on + strandat 1640.497 kb on - strand, within Dsui_1567at 1640.676 kb on - strandat 1640.676 kb on - strandat 1640.676 kb on - strandat 1640.826 kb on + strandat 1640.826 kb on + strandat 1640.834 kb on - strandat 1640.834 kb on - strandat 1640.943 kb on - strandat 1640.956 kb on - strand, within Dsui_1568at 1641.030 kb on - strand, within Dsui_1568at 1641.240 kb on - strand, within Dsui_1568at 1641.613 kb on + strandat 1641.628 kb on + strandat 1641.676 kb on + strand, within Dsui_1569at 1641.828 kb on - strandat 1641.849 kb on - strand, within Dsui_1569at 1641.849 kb on - strandat 1641.849 kb on - strand, within Dsui_1569at 1641.849 kb on - strandat 1641.855 kb on - strandat 1641.879 kb on + strand, within Dsui_1569at 1641.959 kb on - strandat 1642.035 kb on - strand, within Dsui_1569at 1642.038 kb on + strand, within Dsui_1569at 1642.052 kb on + strand, within Dsui_1569at 1642.138 kb on + strand, within Dsui_1569at 1642.246 kb on + strand, within Dsui_1569at 1642.289 kb on + strand, within Dsui_1569at 1642.291 kb on - strand, within Dsui_1569at 1642.312 kb on + strand, within Dsui_1569at 1642.312 kb on + strand, within Dsui_1569at 1642.312 kb on + strand, within Dsui_1569at 1642.381 kb on + strand, within Dsui_1569at 1642.383 kb on + strand, within Dsui_1569at 1642.484 kb on - strand, within Dsui_1569

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,639,830 - Dsui_1566 0.70 -1.2
1,639,867 + +0.5
1,639,898 + Dsui_1566 0.79 -1.5
1,639,927 - Dsui_1566 0.82 -1.6
1,639,953 + +0.5
1,639,961 - -0.5
1,640,012 + -1.5
1,640,164 + Dsui_1567 0.14 +0.5
1,640,172 - Dsui_1567 0.15 -1.4
1,640,247 - Dsui_1567 0.29 -0.3
1,640,302 - Dsui_1567 0.39 +0.7
1,640,307 - +2.1
1,640,454 + -1.8
1,640,462 - Dsui_1567 0.67 -0.2
1,640,462 - Dsui_1567 0.67 +0.3
1,640,462 - Dsui_1567 0.67 +0.3
1,640,464 + +0.5
1,640,467 - Dsui_1567 0.68 -1.6
1,640,478 + +0.5
1,640,489 + -0.5
1,640,497 - Dsui_1567 0.73 -0.2
1,640,676 - -0.7
1,640,676 - -1.2
1,640,676 - +0.2
1,640,826 + -0.2
1,640,826 + +0.2
1,640,834 - -0.5
1,640,834 - -0.5
1,640,943 - +0.5
1,640,956 - Dsui_1568 0.25 +0.5
1,641,030 - Dsui_1568 0.35 +0.5
1,641,240 - Dsui_1568 0.63 -1.8
1,641,613 + -0.5
1,641,628 + +0.1
1,641,676 + Dsui_1569 0.10 -0.6
1,641,828 - +0.5
1,641,849 - Dsui_1569 0.22 -2.1
1,641,849 - +0.5
1,641,849 - Dsui_1569 0.22 -0.5
1,641,849 - +0.5
1,641,855 - -0.5
1,641,879 + Dsui_1569 0.24 +0.5
1,641,959 - +0.5
1,642,035 - Dsui_1569 0.34 -0.5
1,642,038 + Dsui_1569 0.34 -2.6
1,642,052 + Dsui_1569 0.35 +0.9
1,642,138 + Dsui_1569 0.41 -0.3
1,642,246 + Dsui_1569 0.48 -0.4
1,642,289 + Dsui_1569 0.51 -0.9
1,642,291 - Dsui_1569 0.51 -2.6
1,642,312 + Dsui_1569 0.52 -2.6
1,642,312 + Dsui_1569 0.52 -0.8
1,642,312 + Dsui_1569 0.52 +1.1
1,642,381 + Dsui_1569 0.57 -1.3
1,642,383 + Dsui_1569 0.57 -0.2
1,642,484 - Dsui_1569 0.64 +0.5

Or see this region's nucleotide sequence