Strain Fitness in Dechlorosoma suillum PS around Dsui_1525

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1523 and Dsui_1524 are separated by 64 nucleotidesDsui_1524 and Dsui_1525 are separated by 87 nucleotidesDsui_1525 and Dsui_1526 are separated by 73 nucleotidesDsui_1526 and Dsui_1527 are separated by 635 nucleotides Dsui_1523: Dsui_1523 - drug resistance transporter, EmrB/QacA subfamily, at 1,585,476 to 1,586,927 _1523 Dsui_1524: Dsui_1524 - transcriptional regulator, at 1,586,992 to 1,587,495 _1524 Dsui_1525: Dsui_1525 - sulfate/thiosulfate-binding protein, at 1,587,583 to 1,588,590 _1525 Dsui_1526: Dsui_1526 - hypothetical protein, at 1,588,664 to 1,588,861 _1526 Dsui_1527: Dsui_1527 - hypothetical protein, at 1,589,497 to 1,589,706 _1527 Position (kb) 1587 1588 1589Strain fitness (log2 ratio) -3 -2 -1 0 1at 1586.644 kb on + strandat 1586.692 kb on - strandat 1586.751 kb on + strand, within Dsui_1523at 1586.759 kb on - strand, within Dsui_1523at 1586.774 kb on + strandat 1586.838 kb on + strandat 1586.846 kb on - strandat 1586.902 kb on - strandat 1586.936 kb on - strandat 1587.079 kb on + strand, within Dsui_1524at 1587.079 kb on + strand, within Dsui_1524at 1587.105 kb on + strand, within Dsui_1524at 1587.189 kb on + strand, within Dsui_1524at 1587.341 kb on + strand, within Dsui_1524at 1587.351 kb on - strand, within Dsui_1524at 1587.351 kb on - strandat 1587.351 kb on - strandat 1587.383 kb on + strand, within Dsui_1524at 1587.434 kb on + strand, within Dsui_1524at 1587.541 kb on + strandat 1587.549 kb on - strandat 1587.549 kb on - strandat 1587.549 kb on - strandat 1587.549 kb on - strandat 1587.549 kb on - strandat 1587.549 kb on - strandat 1587.587 kb on - strandat 1587.651 kb on - strandat 1587.677 kb on - strandat 1587.692 kb on + strand, within Dsui_1525at 1587.700 kb on - strand, within Dsui_1525at 1587.700 kb on - strand, within Dsui_1525at 1587.719 kb on - strand, within Dsui_1525at 1587.757 kb on + strand, within Dsui_1525at 1587.772 kb on - strand, within Dsui_1525at 1587.839 kb on + strand, within Dsui_1525at 1587.839 kb on + strand, within Dsui_1525at 1587.923 kb on - strand, within Dsui_1525at 1587.928 kb on + strand, within Dsui_1525at 1587.964 kb on + strand, within Dsui_1525at 1588.041 kb on - strandat 1588.148 kb on - strandat 1588.169 kb on - strand, within Dsui_1525at 1588.211 kb on - strand, within Dsui_1525at 1588.340 kb on - strand, within Dsui_1525at 1588.376 kb on - strand, within Dsui_1525at 1588.389 kb on + strand, within Dsui_1525at 1588.389 kb on + strand, within Dsui_1525at 1588.389 kb on + strand, within Dsui_1525at 1588.507 kb on - strandat 1588.519 kb on + strandat 1588.519 kb on + strandat 1588.536 kb on - strandat 1588.571 kb on - strandat 1588.572 kb on + strandat 1588.572 kb on + strandat 1588.655 kb on + strandat 1588.726 kb on + strand, within Dsui_1526at 1588.726 kb on + strandat 1588.734 kb on - strand, within Dsui_1526at 1588.754 kb on + strand, within Dsui_1526at 1588.782 kb on - strand, within Dsui_1526at 1588.803 kb on - strand, within Dsui_1526at 1588.803 kb on - strand, within Dsui_1526at 1588.831 kb on + strand, within Dsui_1526at 1588.870 kb on + strandat 1588.892 kb on - strandat 1588.922 kb on - strandat 1588.922 kb on - strandat 1589.161 kb on - strandat 1589.163 kb on + strandat 1589.164 kb on - strandat 1589.203 kb on + strandat 1589.218 kb on - strandat 1589.275 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,586,644 + +0.6
1,586,692 - +0.6
1,586,751 + Dsui_1523 0.88 +0.6
1,586,759 - Dsui_1523 0.88 +0.6
1,586,774 + -0.4
1,586,838 + +0.6
1,586,846 - +0.6
1,586,902 - -2.6
1,586,936 - -2.6
1,587,079 + Dsui_1524 0.17 -0.3
1,587,079 + Dsui_1524 0.17 -0.1
1,587,105 + Dsui_1524 0.22 -0.3
1,587,189 + Dsui_1524 0.39 -0.3
1,587,341 + Dsui_1524 0.69 -0.1
1,587,351 - Dsui_1524 0.71 -1.4
1,587,351 - -0.4
1,587,351 - -0.4
1,587,383 + Dsui_1524 0.78 -0.4
1,587,434 + Dsui_1524 0.88 -2.4
1,587,541 + -0.5
1,587,549 - -0.4
1,587,549 - -0.4
1,587,549 - +0.6
1,587,549 - -2.0
1,587,549 - +0.6
1,587,549 - +0.6
1,587,587 - -0.4
1,587,651 - +0.6
1,587,677 - -1.4
1,587,692 + Dsui_1525 0.11 -0.4
1,587,700 - Dsui_1525 0.12 -0.4
1,587,700 - Dsui_1525 0.12 -0.4
1,587,719 - Dsui_1525 0.13 +0.6
1,587,757 + Dsui_1525 0.17 -0.9
1,587,772 - Dsui_1525 0.19 -0.4
1,587,839 + Dsui_1525 0.25 -1.6
1,587,839 + Dsui_1525 0.25 -0.6
1,587,923 - Dsui_1525 0.34 -0.4
1,587,928 + Dsui_1525 0.34 -2.0
1,587,964 + Dsui_1525 0.38 -0.4
1,588,041 - -1.0
1,588,148 - +0.6
1,588,169 - Dsui_1525 0.58 -1.0
1,588,211 - Dsui_1525 0.62 -1.0
1,588,340 - Dsui_1525 0.75 -0.4
1,588,376 - Dsui_1525 0.79 -0.4
1,588,389 + Dsui_1525 0.80 -3.0
1,588,389 + Dsui_1525 0.80 -1.9
1,588,389 + Dsui_1525 0.80 -0.4
1,588,507 - +0.6
1,588,519 + -0.4
1,588,519 + -2.2
1,588,536 - -2.2
1,588,571 - +0.6
1,588,572 + -1.7
1,588,572 + -0.4
1,588,655 + +0.6
1,588,726 + Dsui_1526 0.31 -0.4
1,588,726 + +0.6
1,588,734 - Dsui_1526 0.35 -0.3
1,588,754 + Dsui_1526 0.45 +0.6
1,588,782 - Dsui_1526 0.60 +0.1
1,588,803 - Dsui_1526 0.70 -0.1
1,588,803 - Dsui_1526 0.70 -0.1
1,588,831 + Dsui_1526 0.84 -0.4
1,588,870 + +0.6
1,588,892 - -0.1
1,588,922 - +0.0
1,588,922 - -0.2
1,589,161 - -2.2
1,589,163 + -0.4
1,589,164 - +0.6
1,589,203 + -0.4
1,589,218 - -0.4
1,589,275 - -0.7

Or see this region's nucleotide sequence