Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1504 and Dsui_1505 are separated by 18 nucleotides Dsui_1505 and Dsui_1507 are separated by 308 nucleotides
Dsui_1504: Dsui_1504 - trypsin-like serine protease with C-terminal PDZ domain, at 1,569,175 to 1,570,326
_1504
Dsui_1505: Dsui_1505 - phage-related lysozyme (muraminidase), at 1,570,345 to 1,570,809
_1505
Dsui_1507: Dsui_1507 - transposase, at 1,571,118 to 1,572,608
_1507
Position (kb)
1570
1571 Strain fitness (log2 ratio)
-2
-1
0
1 at 1569.371 kb on + strand, within Dsui_1504 at 1569.371 kb on + strand, within Dsui_1504 at 1569.371 kb on + strand, within Dsui_1504 at 1569.379 kb on - strand, within Dsui_1504 at 1569.413 kb on - strand, within Dsui_1504 at 1569.554 kb on + strand, within Dsui_1504 at 1569.587 kb on - strand, within Dsui_1504 at 1569.594 kb on + strand, within Dsui_1504 at 1569.602 kb on - strand, within Dsui_1504 at 1569.723 kb on + strand, within Dsui_1504 at 1569.725 kb on + strand, within Dsui_1504 at 1569.862 kb on + strand, within Dsui_1504 at 1570.030 kb on - strand, within Dsui_1504 at 1570.075 kb on - strand, within Dsui_1504 at 1570.245 kb on + strand at 1570.580 kb on - strand, within Dsui_1505 at 1570.733 kb on + strand, within Dsui_1505 at 1570.890 kb on + strand at 1570.968 kb on - strand at 1571.009 kb on - strand at 1571.009 kb on - strand at 1571.009 kb on - strand at 1571.009 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 1,569,371 + Dsui_1504 0.17 -0.7 1,569,371 + Dsui_1504 0.17 -1.4 1,569,371 + Dsui_1504 0.17 -1.1 1,569,379 - Dsui_1504 0.18 -2.2 1,569,413 - Dsui_1504 0.21 +0.6 1,569,554 + Dsui_1504 0.33 +1.5 1,569,587 - Dsui_1504 0.36 -1.0 1,569,594 + Dsui_1504 0.36 -0.5 1,569,602 - Dsui_1504 0.37 -0.4 1,569,723 + Dsui_1504 0.48 -0.4 1,569,725 + Dsui_1504 0.48 +0.1 1,569,862 + Dsui_1504 0.60 -1.0 1,570,030 - Dsui_1504 0.74 +0.6 1,570,075 - Dsui_1504 0.78 -1.0 1,570,245 + -1.0 1,570,580 - Dsui_1505 0.51 -1.7 1,570,733 + Dsui_1505 0.83 +0.6 1,570,890 + -2.0 1,570,968 - -1.4 1,571,009 - -0.7 1,571,009 - -0.4 1,571,009 - -0.4 1,571,009 - +0.6
Or see this region's nucleotide sequence