Strain Fitness in Dechlorosoma suillum PS around Dsui_1439

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1437 and Dsui_1438 are separated by 9 nucleotidesDsui_1438 and Dsui_1439 are separated by 9 nucleotidesDsui_1439 and Dsui_1440 are separated by 4 nucleotidesDsui_1440 and Dsui_1441 are separated by 157 nucleotides Dsui_1437: Dsui_1437 - chemotaxis protein histidine kinase-like protein, at 1,490,858 to 1,493,092 _1437 Dsui_1438: Dsui_1438 - putative NTP binding protein (contains STAS domain), at 1,493,102 to 1,493,410 _1438 Dsui_1439: Dsui_1439 - methyl-accepting chemotaxis protein, at 1,493,420 to 1,494,691 _1439 Dsui_1440: Dsui_1440 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 1,494,696 to 1,495,061 _1440 Dsui_1441: Dsui_1441 - phenylacetate-CoA ligase, at 1,495,219 to 1,496,523 _1441 Position (kb) 1493 1494 1495Strain fitness (log2 ratio) -2 -1 0 1at 1492.494 kb on + strand, within Dsui_1437at 1492.583 kb on + strand, within Dsui_1437at 1492.591 kb on - strand, within Dsui_1437at 1492.672 kb on + strandat 1492.826 kb on + strand, within Dsui_1437at 1492.834 kb on - strand, within Dsui_1437at 1492.834 kb on - strand, within Dsui_1437at 1493.291 kb on - strand, within Dsui_1438at 1493.325 kb on - strand, within Dsui_1438at 1493.356 kb on - strand, within Dsui_1438at 1493.379 kb on - strand, within Dsui_1438at 1493.405 kb on + strandat 1493.418 kb on + strandat 1493.426 kb on - strandat 1493.490 kb on - strandat 1493.531 kb on + strandat 1493.552 kb on - strand, within Dsui_1439at 1493.589 kb on + strand, within Dsui_1439at 1493.599 kb on + strand, within Dsui_1439at 1493.667 kb on + strand, within Dsui_1439at 1493.692 kb on - strand, within Dsui_1439at 1493.734 kb on - strand, within Dsui_1439at 1493.782 kb on + strand, within Dsui_1439at 1493.790 kb on + strand, within Dsui_1439at 1493.790 kb on - strand, within Dsui_1439at 1493.838 kb on + strand, within Dsui_1439at 1494.073 kb on + strand, within Dsui_1439at 1494.160 kb on - strand, within Dsui_1439at 1494.183 kb on - strand, within Dsui_1439at 1494.328 kb on + strand, within Dsui_1439at 1494.411 kb on + strand, within Dsui_1439at 1494.450 kb on - strand, within Dsui_1439at 1494.552 kb on + strand, within Dsui_1439at 1494.557 kb on + strand, within Dsui_1439at 1494.880 kb on - strand, within Dsui_1440at 1494.896 kb on + strand, within Dsui_1440at 1494.902 kb on + strand, within Dsui_1440at 1494.907 kb on + strand, within Dsui_1440at 1494.917 kb on + strand, within Dsui_1440at 1494.931 kb on - strand, within Dsui_1440at 1494.943 kb on - strand, within Dsui_1440at 1495.027 kb on - strandat 1495.054 kb on - strandat 1495.104 kb on + strandat 1495.110 kb on + strandat 1495.155 kb on - strandat 1495.167 kb on - strandat 1495.230 kb on - strandat 1495.244 kb on + strandat 1495.297 kb on - strandat 1495.319 kb on + strandat 1495.394 kb on + strand, within Dsui_1441at 1495.587 kb on - strand, within Dsui_1441

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,492,494 + Dsui_1437 0.73 -0.4
1,492,583 + Dsui_1437 0.77 -0.4
1,492,591 - Dsui_1437 0.78 -0.3
1,492,672 + -0.4
1,492,826 + Dsui_1437 0.88 -1.0
1,492,834 - Dsui_1437 0.88 -0.1
1,492,834 - Dsui_1437 0.88 -0.0
1,493,291 - Dsui_1438 0.61 +0.0
1,493,325 - Dsui_1438 0.72 +0.2
1,493,356 - Dsui_1438 0.82 -0.3
1,493,379 - Dsui_1438 0.90 -0.3
1,493,405 + -1.4
1,493,418 + -1.4
1,493,426 - -0.4
1,493,490 - -0.2
1,493,531 + -2.2
1,493,552 - Dsui_1439 0.10 -0.1
1,493,589 + Dsui_1439 0.13 +0.6
1,493,599 + Dsui_1439 0.14 -1.8
1,493,667 + Dsui_1439 0.19 -0.4
1,493,692 - Dsui_1439 0.21 +0.1
1,493,734 - Dsui_1439 0.25 -0.3
1,493,782 + Dsui_1439 0.28 -0.4
1,493,790 + Dsui_1439 0.29 -0.4
1,493,790 - Dsui_1439 0.29 -0.2
1,493,838 + Dsui_1439 0.33 -2.0
1,494,073 + Dsui_1439 0.51 +0.6
1,494,160 - Dsui_1439 0.58 +0.1
1,494,183 - Dsui_1439 0.60 -0.2
1,494,328 + Dsui_1439 0.71 -2.6
1,494,411 + Dsui_1439 0.78 -0.4
1,494,450 - Dsui_1439 0.81 +0.1
1,494,552 + Dsui_1439 0.89 +0.6
1,494,557 + Dsui_1439 0.89 -0.4
1,494,880 - Dsui_1440 0.50 -0.4
1,494,896 + Dsui_1440 0.55 -1.4
1,494,902 + Dsui_1440 0.56 -1.0
1,494,907 + Dsui_1440 0.58 -0.4
1,494,917 + Dsui_1440 0.60 +1.6
1,494,931 - Dsui_1440 0.64 -0.1
1,494,943 - Dsui_1440 0.67 -0.4
1,495,027 - +0.4
1,495,054 - -0.4
1,495,104 + -1.0
1,495,110 + -0.4
1,495,155 - +0.6
1,495,167 - +0.6
1,495,230 - -1.8
1,495,244 + -0.4
1,495,297 - -2.2
1,495,319 + -1.4
1,495,394 + Dsui_1441 0.13 -0.4
1,495,587 - Dsui_1441 0.28 -0.8

Or see this region's nucleotide sequence