Strain Fitness in Dechlorosoma suillum PS around Dsui_1228

Experiment: L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1227 and Dsui_1228 are separated by 147 nucleotidesDsui_1228 and Dsui_1229 are separated by 94 nucleotides Dsui_1227: Dsui_1227 - DNA/RNA helicase, superfamily I, at 1,283,019 to 1,285,226 _1227 Dsui_1228: Dsui_1228 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,285,374 to 1,286,645 _1228 Dsui_1229: Dsui_1229 - Zn-dependent oxidoreductase, NADPH:quinone reductase, at 1,286,740 to 1,287,714 _1229 Position (kb) 1285 1286 1287Strain fitness (log2 ratio) -3 -2 -1 0 1at 1284.615 kb on - strandat 1284.732 kb on + strand, within Dsui_1227at 1284.750 kb on + strand, within Dsui_1227at 1284.885 kb on + strand, within Dsui_1227at 1284.987 kb on + strand, within Dsui_1227at 1285.179 kb on + strandat 1285.239 kb on - strandat 1285.264 kb on - strandat 1285.574 kb on - strand, within Dsui_1228at 1285.577 kb on + strand, within Dsui_1228at 1285.596 kb on + strand, within Dsui_1228at 1285.614 kb on + strand, within Dsui_1228at 1285.707 kb on - strand, within Dsui_1228at 1286.095 kb on + strand, within Dsui_1228at 1286.246 kb on + strand, within Dsui_1228at 1286.264 kb on - strand, within Dsui_1228at 1286.269 kb on - strand, within Dsui_1228at 1286.307 kb on - strand, within Dsui_1228at 1286.376 kb on - strand, within Dsui_1228at 1286.489 kb on - strand, within Dsui_1228at 1286.524 kb on - strandat 1286.563 kb on - strandat 1286.604 kb on - strandat 1286.624 kb on - strandat 1286.662 kb on - strandat 1286.697 kb on + strandat 1286.721 kb on + strandat 1286.790 kb on - strandat 1286.792 kb on + strandat 1286.889 kb on + strand, within Dsui_1229at 1286.949 kb on - strand, within Dsui_1229at 1287.266 kb on + strand, within Dsui_1229at 1287.269 kb on - strand, within Dsui_1229at 1287.354 kb on + strand, within Dsui_1229at 1287.417 kb on - strand, within Dsui_1229at 1287.419 kb on + strand, within Dsui_1229at 1287.466 kb on - strand, within Dsui_1229at 1287.477 kb on + strand, within Dsui_1229at 1287.546 kb on - strand, within Dsui_1229at 1287.583 kb on - strandat 1287.645 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
remove
1,284,615 - +0.5
1,284,732 + Dsui_1227 0.78 -0.4
1,284,750 + Dsui_1227 0.78 -2.8
1,284,885 + Dsui_1227 0.85 -1.0
1,284,987 + Dsui_1227 0.89 -1.1
1,285,179 + -0.4
1,285,239 - +0.5
1,285,264 - -0.5
1,285,574 - Dsui_1228 0.16 -0.7
1,285,577 + Dsui_1228 0.16 -0.5
1,285,596 + Dsui_1228 0.17 -0.5
1,285,614 + Dsui_1228 0.19 -2.3
1,285,707 - Dsui_1228 0.26 -0.4
1,286,095 + Dsui_1228 0.57 -1.5
1,286,246 + Dsui_1228 0.69 +0.5
1,286,264 - Dsui_1228 0.70 -1.5
1,286,269 - Dsui_1228 0.70 -0.5
1,286,307 - Dsui_1228 0.73 -0.9
1,286,376 - Dsui_1228 0.79 -0.1
1,286,489 - Dsui_1228 0.88 -0.3
1,286,524 - -0.5
1,286,563 - -0.7
1,286,604 - +0.5
1,286,624 - -0.1
1,286,662 - -0.5
1,286,697 + -1.1
1,286,721 + -0.5
1,286,790 - -1.1
1,286,792 + -0.1
1,286,889 + Dsui_1229 0.15 -1.4
1,286,949 - Dsui_1229 0.21 -1.5
1,287,266 + Dsui_1229 0.54 -1.4
1,287,269 - Dsui_1229 0.54 -1.1
1,287,354 + Dsui_1229 0.63 -1.3
1,287,417 - Dsui_1229 0.69 +0.5
1,287,419 + Dsui_1229 0.70 +1.5
1,287,466 - Dsui_1229 0.74 -1.5
1,287,477 + Dsui_1229 0.76 -0.5
1,287,546 - Dsui_1229 0.83 +0.5
1,287,583 - +0.5
1,287,645 - -2.1

Or see this region's nucleotide sequence