Strain Fitness in Dechlorosoma suillum PS around Dsui_0723

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0721 and Dsui_0722 overlap by 4 nucleotidesDsui_0722 and Dsui_0723 are separated by 427 nucleotidesDsui_0723 and Dsui_0724 are separated by 226 nucleotides Dsui_0721: Dsui_0721 - radical SAM additional 4Fe4S-binding domain protein, at 714,229 to 715,599 _0721 Dsui_0722: Dsui_0722 - hypothetical protein, at 715,596 to 715,766 _0722 Dsui_0723: Dsui_0723 - chemotaxis signal transduction protein, at 716,194 to 718,851 _0723 Dsui_0724: Dsui_0724 - ABC-type multidrug transport system, ATPase component, at 719,078 to 720,001 _0724 Position (kb) 716 717 718 719Strain fitness (log2 ratio) -3 -2 -1 0 1at 715.265 kb on + strand, within Dsui_0721at 715.384 kb on - strand, within Dsui_0721at 715.392 kb on - strand, within Dsui_0721at 715.587 kb on - strandat 715.683 kb on + strandat 715.714 kb on - strandat 715.772 kb on - strandat 715.866 kb on - strandat 715.971 kb on - strandat 716.079 kb on + strandat 716.087 kb on - strandat 716.125 kb on + strandat 716.478 kb on - strand, within Dsui_0723at 716.496 kb on + strandat 716.564 kb on - strand, within Dsui_0723at 716.683 kb on + strand, within Dsui_0723at 716.683 kb on + strandat 716.691 kb on - strand, within Dsui_0723at 716.692 kb on - strand, within Dsui_0723at 716.792 kb on - strand, within Dsui_0723at 716.838 kb on - strandat 717.142 kb on + strand, within Dsui_0723at 717.143 kb on + strand, within Dsui_0723at 717.217 kb on - strand, within Dsui_0723at 717.262 kb on - strand, within Dsui_0723at 717.298 kb on - strand, within Dsui_0723at 717.320 kb on - strand, within Dsui_0723at 717.333 kb on + strand, within Dsui_0723at 717.392 kb on + strand, within Dsui_0723at 717.392 kb on + strand, within Dsui_0723at 717.392 kb on + strand, within Dsui_0723at 717.400 kb on - strandat 717.400 kb on - strand, within Dsui_0723at 717.400 kb on - strand, within Dsui_0723at 717.400 kb on - strand, within Dsui_0723at 717.402 kb on - strand, within Dsui_0723at 717.425 kb on + strand, within Dsui_0723at 717.475 kb on + strandat 717.480 kb on + strand, within Dsui_0723at 717.633 kb on + strand, within Dsui_0723at 717.672 kb on + strand, within Dsui_0723at 717.685 kb on - strand, within Dsui_0723at 717.698 kb on + strandat 717.745 kb on - strand, within Dsui_0723at 717.822 kb on - strandat 717.826 kb on + strandat 717.847 kb on + strandat 717.920 kb on + strand, within Dsui_0723at 717.955 kb on + strand, within Dsui_0723at 717.955 kb on + strand, within Dsui_0723at 717.956 kb on + strand, within Dsui_0723at 718.020 kb on - strand, within Dsui_0723at 718.025 kb on - strand, within Dsui_0723at 718.176 kb on + strand, within Dsui_0723at 718.185 kb on - strand, within Dsui_0723at 718.390 kb on + strand, within Dsui_0723at 718.390 kb on + strand, within Dsui_0723at 718.398 kb on - strand, within Dsui_0723at 718.419 kb on + strand, within Dsui_0723at 718.437 kb on - strand, within Dsui_0723at 718.460 kb on - strand, within Dsui_0723at 718.578 kb on - strandat 718.589 kb on - strandat 718.663 kb on + strandat 718.666 kb on - strandat 718.691 kb on - strandat 718.866 kb on - strandat 718.866 kb on - strandat 718.913 kb on - strandat 718.973 kb on - strandat 719.001 kb on + strandat 719.035 kb on + strandat 719.083 kb on + strandat 719.166 kb on - strandat 719.326 kb on + strand, within Dsui_0724at 719.422 kb on + strandat 719.430 kb on + strand, within Dsui_0724at 719.430 kb on - strand, within Dsui_0724at 719.430 kb on - strand, within Dsui_0724at 719.499 kb on + strand, within Dsui_0724at 719.499 kb on + strand, within Dsui_0724at 719.596 kb on - strand, within Dsui_0724at 719.692 kb on - strand, within Dsui_0724at 719.851 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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715,265 + Dsui_0721 0.76 -2.0
715,384 - Dsui_0721 0.84 -1.8
715,392 - Dsui_0721 0.85 +0.6
715,587 - -0.4
715,683 + +0.6
715,714 - +0.6
715,772 - +0.6
715,866 - -2.0
715,971 - +0.2
716,079 + -0.1
716,087 - -0.4
716,125 + -1.0
716,478 - Dsui_0723 0.11 -1.4
716,496 + -0.4
716,564 - Dsui_0723 0.14 -1.0
716,683 + Dsui_0723 0.18 -1.0
716,683 + +0.6
716,691 - Dsui_0723 0.19 -1.0
716,692 - Dsui_0723 0.19 -0.4
716,792 - Dsui_0723 0.22 +0.6
716,838 - +0.6
717,142 + Dsui_0723 0.36 -1.4
717,143 + Dsui_0723 0.36 +0.6
717,217 - Dsui_0723 0.38 -0.4
717,262 - Dsui_0723 0.40 -2.4
717,298 - Dsui_0723 0.42 +0.6
717,320 - Dsui_0723 0.42 -1.4
717,333 + Dsui_0723 0.43 -1.4
717,392 + Dsui_0723 0.45 -0.4
717,392 + Dsui_0723 0.45 -1.0
717,392 + Dsui_0723 0.45 -1.8
717,400 - +0.6
717,400 - Dsui_0723 0.45 +0.6
717,400 - Dsui_0723 0.45 -2.8
717,400 - Dsui_0723 0.45 -1.4
717,402 - Dsui_0723 0.45 -1.0
717,425 + Dsui_0723 0.46 -0.4
717,475 + +0.6
717,480 + Dsui_0723 0.48 -0.4
717,633 + Dsui_0723 0.54 -1.4
717,672 + Dsui_0723 0.56 -1.4
717,685 - Dsui_0723 0.56 +0.6
717,698 + +0.6
717,745 - Dsui_0723 0.58 -2.4
717,822 - +0.6
717,826 + +0.6
717,847 + +0.6
717,920 + Dsui_0723 0.65 +0.6
717,955 + Dsui_0723 0.66 -0.4
717,955 + Dsui_0723 0.66 -1.8
717,956 + Dsui_0723 0.66 +0.6
718,020 - Dsui_0723 0.69 -2.0
718,025 - Dsui_0723 0.69 +0.6
718,176 + Dsui_0723 0.75 -1.0
718,185 - Dsui_0723 0.75 -0.4
718,390 + Dsui_0723 0.83 -0.4
718,390 + Dsui_0723 0.83 -1.4
718,398 - Dsui_0723 0.83 -0.4
718,419 + Dsui_0723 0.84 -0.4
718,437 - Dsui_0723 0.84 +0.6
718,460 - Dsui_0723 0.85 -0.4
718,578 - +0.6
718,589 - -0.4
718,663 + +0.6
718,666 - -2.4
718,691 - +0.6
718,866 - -0.7
718,866 - +0.1
718,913 - -0.3
718,973 - -0.1
719,001 + +0.6
719,035 + +0.6
719,083 + -0.4
719,166 - -0.3
719,326 + Dsui_0724 0.27 -1.8
719,422 + +0.6
719,430 + Dsui_0724 0.38 -1.4
719,430 - Dsui_0724 0.38 -0.5
719,430 - Dsui_0724 0.38 -0.2
719,499 + Dsui_0724 0.46 +0.6
719,499 + Dsui_0724 0.46 +0.6
719,596 - Dsui_0724 0.56 +0.1
719,692 - Dsui_0724 0.66 -0.3
719,851 + +0.6

Or see this region's nucleotide sequence