Strain Fitness in Dechlorosoma suillum PS around Dsui_0115

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0114 and Dsui_0115 are separated by 203 nucleotidesDsui_0115 and Dsui_0116 are separated by 116 nucleotidesDsui_0116 and Dsui_0117 are separated by 42 nucleotides Dsui_0114: Dsui_0114 - ammonium transporter, at 112,311 to 113,750 _0114 Dsui_0115: Dsui_0115 - hypothetical protein, at 113,954 to 114,448 _0115 Dsui_0116: Dsui_0116 - alkylhydroperoxidase AhpD family core domain protein, at 114,565 to 114,924 _0116 Dsui_0117: Dsui_0117 - methyl-accepting chemotaxis protein, at 114,967 to 116,610 _0117 Position (kb) 113 114 115Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 112.966 kb on + strandat 112.990 kb on + strand, within Dsui_0114at 112.990 kb on + strandat 112.990 kb on + strand, within Dsui_0114at 113.030 kb on + strand, within Dsui_0114at 113.115 kb on + strandat 113.146 kb on + strandat 113.173 kb on - strand, within Dsui_0114at 113.187 kb on + strand, within Dsui_0114at 113.255 kb on + strandat 113.287 kb on - strand, within Dsui_0114at 113.321 kb on + strand, within Dsui_0114at 113.336 kb on - strand, within Dsui_0114at 113.383 kb on + strandat 113.427 kb on - strand, within Dsui_0114at 113.437 kb on - strand, within Dsui_0114at 113.437 kb on - strand, within Dsui_0114at 113.443 kb on - strand, within Dsui_0114at 113.446 kb on + strand, within Dsui_0114at 113.457 kb on + strand, within Dsui_0114at 113.462 kb on + strand, within Dsui_0114at 113.497 kb on - strand, within Dsui_0114at 113.533 kb on + strandat 113.543 kb on + strand, within Dsui_0114at 113.636 kb on + strandat 113.644 kb on - strandat 113.685 kb on - strandat 113.726 kb on - strandat 113.751 kb on - strandat 113.795 kb on - strandat 113.805 kb on - strandat 113.896 kb on + strandat 113.896 kb on + strandat 113.904 kb on - strandat 113.904 kb on - strandat 113.985 kb on - strandat 113.999 kb on + strandat 114.006 kb on - strand, within Dsui_0115at 114.030 kb on - strand, within Dsui_0115at 114.051 kb on - strand, within Dsui_0115at 114.062 kb on + strand, within Dsui_0115at 114.121 kb on + strand, within Dsui_0115at 114.185 kb on - strand, within Dsui_0115at 114.206 kb on - strand, within Dsui_0115at 114.285 kb on + strand, within Dsui_0115at 114.293 kb on - strand, within Dsui_0115at 114.331 kb on - strand, within Dsui_0115at 114.421 kb on + strandat 114.444 kb on - strandat 114.496 kb on - strandat 114.499 kb on + strandat 114.514 kb on + strandat 114.562 kb on + strandat 114.615 kb on - strandat 114.621 kb on + strandat 114.775 kb on + strand, within Dsui_0116at 114.775 kb on + strand, within Dsui_0116at 114.826 kb on - strand, within Dsui_0116at 114.853 kb on + strand, within Dsui_0116at 114.866 kb on - strandat 114.885 kb on - strand, within Dsui_0116at 114.889 kb on - strandat 114.900 kb on - strandat 115.004 kb on + strandat 115.012 kb on - strandat 115.016 kb on + strandat 115.024 kb on - strandat 115.086 kb on + strandat 115.142 kb on - strand, within Dsui_0117at 115.185 kb on + strand, within Dsui_0117at 115.256 kb on - strand, within Dsui_0117at 115.369 kb on - strand, within Dsui_0117at 115.411 kb on + strand, within Dsui_0117at 115.419 kb on - strand, within Dsui_0117

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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112,966 + +0.6
112,990 + Dsui_0114 0.47 +0.6
112,990 + +0.6
112,990 + Dsui_0114 0.47 -1.4
113,030 + Dsui_0114 0.50 -0.4
113,115 + +0.6
113,146 + +0.6
113,173 - Dsui_0114 0.60 -1.4
113,187 + Dsui_0114 0.61 +0.2
113,255 + +0.6
113,287 - Dsui_0114 0.68 -0.4
113,321 + Dsui_0114 0.70 +0.6
113,336 - Dsui_0114 0.71 -0.4
113,383 + +0.6
113,427 - Dsui_0114 0.78 -0.4
113,437 - Dsui_0114 0.78 -1.0
113,437 - Dsui_0114 0.78 +0.6
113,443 - Dsui_0114 0.79 -0.4
113,446 + Dsui_0114 0.79 -1.4
113,457 + Dsui_0114 0.80 +0.6
113,462 + Dsui_0114 0.80 +0.6
113,497 - Dsui_0114 0.82 -2.4
113,533 + +0.6
113,543 + Dsui_0114 0.86 -1.8
113,636 + +0.6
113,644 - -0.2
113,685 - -2.4
113,726 - -1.0
113,751 - -1.0
113,795 - -1.0
113,805 - -1.8
113,896 + +0.6
113,896 + +0.6
113,904 - +0.1
113,904 - +1.8
113,985 - -0.2
113,999 + -1.0
114,006 - Dsui_0115 0.11 -0.8
114,030 - Dsui_0115 0.15 +0.4
114,051 - Dsui_0115 0.20 -1.4
114,062 + Dsui_0115 0.22 -2.0
114,121 + Dsui_0115 0.34 -2.0
114,185 - Dsui_0115 0.47 -0.1
114,206 - Dsui_0115 0.51 -0.2
114,285 + Dsui_0115 0.67 -1.8
114,293 - Dsui_0115 0.68 -0.6
114,331 - Dsui_0115 0.76 -0.1
114,421 + +0.6
114,444 - +0.6
114,496 - -0.4
114,499 + -0.4
114,514 + +0.6
114,562 + -0.4
114,615 - +0.6
114,621 + +0.6
114,775 + Dsui_0116 0.58 -0.4
114,775 + Dsui_0116 0.58 -1.0
114,826 - Dsui_0116 0.72 -2.2
114,853 + Dsui_0116 0.80 -1.4
114,866 - -1.0
114,885 - Dsui_0116 0.89 -1.4
114,889 - -1.0
114,900 - -0.4
115,004 + +0.6
115,012 - -2.0
115,016 + -1.0
115,024 - -0.4
115,086 + +0.6
115,142 - Dsui_0117 0.11 -3.0
115,185 + Dsui_0117 0.13 -1.0
115,256 - Dsui_0117 0.18 -0.4
115,369 - Dsui_0117 0.24 +0.6
115,411 + Dsui_0117 0.27 -0.4
115,419 - Dsui_0117 0.27 -2.0

Or see this region's nucleotide sequence