Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0114 and Dsui_0115 are separated by 203 nucleotides Dsui_0115 and Dsui_0116 are separated by 116 nucleotides Dsui_0116 and Dsui_0117 are separated by 42 nucleotides
Dsui_0114: Dsui_0114 - ammonium transporter, at 112,311 to 113,750
_0114
Dsui_0115: Dsui_0115 - hypothetical protein, at 113,954 to 114,448
_0115
Dsui_0116: Dsui_0116 - alkylhydroperoxidase AhpD family core domain protein, at 114,565 to 114,924
_0116
Dsui_0117: Dsui_0117 - methyl-accepting chemotaxis protein, at 114,967 to 116,610
_0117
Position (kb)
113
114
115 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 112.966 kb on + strand at 112.990 kb on + strand, within Dsui_0114 at 112.990 kb on + strand at 112.990 kb on + strand, within Dsui_0114 at 113.030 kb on + strand, within Dsui_0114 at 113.115 kb on + strand at 113.146 kb on + strand at 113.173 kb on - strand, within Dsui_0114 at 113.187 kb on + strand, within Dsui_0114 at 113.255 kb on + strand at 113.287 kb on - strand, within Dsui_0114 at 113.321 kb on + strand, within Dsui_0114 at 113.336 kb on - strand, within Dsui_0114 at 113.383 kb on + strand at 113.427 kb on - strand, within Dsui_0114 at 113.437 kb on - strand, within Dsui_0114 at 113.437 kb on - strand, within Dsui_0114 at 113.443 kb on - strand, within Dsui_0114 at 113.446 kb on + strand, within Dsui_0114 at 113.457 kb on + strand, within Dsui_0114 at 113.462 kb on + strand, within Dsui_0114 at 113.497 kb on - strand, within Dsui_0114 at 113.533 kb on + strand at 113.543 kb on + strand, within Dsui_0114 at 113.636 kb on + strand at 113.644 kb on - strand at 113.685 kb on - strand at 113.726 kb on - strand at 113.751 kb on - strand at 113.795 kb on - strand at 113.805 kb on - strand at 113.896 kb on + strand at 113.896 kb on + strand at 113.904 kb on - strand at 113.904 kb on - strand at 113.985 kb on - strand at 113.999 kb on + strand at 114.006 kb on - strand, within Dsui_0115 at 114.030 kb on - strand, within Dsui_0115 at 114.051 kb on - strand, within Dsui_0115 at 114.062 kb on + strand, within Dsui_0115 at 114.121 kb on + strand, within Dsui_0115 at 114.185 kb on - strand, within Dsui_0115 at 114.206 kb on - strand, within Dsui_0115 at 114.285 kb on + strand, within Dsui_0115 at 114.293 kb on - strand, within Dsui_0115 at 114.331 kb on - strand, within Dsui_0115 at 114.421 kb on + strand at 114.444 kb on - strand at 114.496 kb on - strand at 114.499 kb on + strand at 114.514 kb on + strand at 114.562 kb on + strand at 114.615 kb on - strand at 114.621 kb on + strand at 114.775 kb on + strand, within Dsui_0116 at 114.775 kb on + strand, within Dsui_0116 at 114.826 kb on - strand, within Dsui_0116 at 114.853 kb on + strand, within Dsui_0116 at 114.866 kb on - strand at 114.885 kb on - strand, within Dsui_0116 at 114.889 kb on - strand at 114.900 kb on - strand at 115.004 kb on + strand at 115.012 kb on - strand at 115.016 kb on + strand at 115.024 kb on - strand at 115.086 kb on + strand at 115.142 kb on - strand, within Dsui_0117 at 115.185 kb on + strand, within Dsui_0117 at 115.256 kb on - strand, within Dsui_0117 at 115.369 kb on - strand, within Dsui_0117 at 115.411 kb on + strand, within Dsui_0117 at 115.419 kb on - strand, within Dsui_0117
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 112,966 + +0.6 112,990 + Dsui_0114 0.47 +0.6 112,990 + +0.6 112,990 + Dsui_0114 0.47 -1.4 113,030 + Dsui_0114 0.50 -0.4 113,115 + +0.6 113,146 + +0.6 113,173 - Dsui_0114 0.60 -1.4 113,187 + Dsui_0114 0.61 +0.2 113,255 + +0.6 113,287 - Dsui_0114 0.68 -0.4 113,321 + Dsui_0114 0.70 +0.6 113,336 - Dsui_0114 0.71 -0.4 113,383 + +0.6 113,427 - Dsui_0114 0.78 -0.4 113,437 - Dsui_0114 0.78 -1.0 113,437 - Dsui_0114 0.78 +0.6 113,443 - Dsui_0114 0.79 -0.4 113,446 + Dsui_0114 0.79 -1.4 113,457 + Dsui_0114 0.80 +0.6 113,462 + Dsui_0114 0.80 +0.6 113,497 - Dsui_0114 0.82 -2.4 113,533 + +0.6 113,543 + Dsui_0114 0.86 -1.8 113,636 + +0.6 113,644 - -0.2 113,685 - -2.4 113,726 - -1.0 113,751 - -1.0 113,795 - -1.0 113,805 - -1.8 113,896 + +0.6 113,896 + +0.6 113,904 - +0.1 113,904 - +1.8 113,985 - -0.2 113,999 + -1.0 114,006 - Dsui_0115 0.11 -0.8 114,030 - Dsui_0115 0.15 +0.4 114,051 - Dsui_0115 0.20 -1.4 114,062 + Dsui_0115 0.22 -2.0 114,121 + Dsui_0115 0.34 -2.0 114,185 - Dsui_0115 0.47 -0.1 114,206 - Dsui_0115 0.51 -0.2 114,285 + Dsui_0115 0.67 -1.8 114,293 - Dsui_0115 0.68 -0.6 114,331 - Dsui_0115 0.76 -0.1 114,421 + +0.6 114,444 - +0.6 114,496 - -0.4 114,499 + -0.4 114,514 + +0.6 114,562 + -0.4 114,615 - +0.6 114,621 + +0.6 114,775 + Dsui_0116 0.58 -0.4 114,775 + Dsui_0116 0.58 -1.0 114,826 - Dsui_0116 0.72 -2.2 114,853 + Dsui_0116 0.80 -1.4 114,866 - -1.0 114,885 - Dsui_0116 0.89 -1.4 114,889 - -1.0 114,900 - -0.4 115,004 + +0.6 115,012 - -2.0 115,016 + -1.0 115,024 - -0.4 115,086 + +0.6 115,142 - Dsui_0117 0.11 -3.0 115,185 + Dsui_0117 0.13 -1.0 115,256 - Dsui_0117 0.18 -0.4 115,369 - Dsui_0117 0.24 +0.6 115,411 + Dsui_0117 0.27 -0.4 115,419 - Dsui_0117 0.27 -2.0
Or see this region's nucleotide sequence