Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03646

Experiment: PYE_noCalcium 25C survival rep1 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 25C survival rep1 12 days
3,803,658	-				+1.3
3,803,659	-				+1.4
3,803,775	+				-0.5
3,803,783	-				-1.1
3,803,783	-				+0.3
3,803,806	+				-2.2
3,803,814	+				+0.5
3,803,814	+				-2.4
3,803,814	+				-0.9
3,803,814	+				-2.2
3,803,814	+				-0.7
3,803,814	+				-0.2
3,803,814	+				+2.9
3,803,814	+				-0.9
3,803,814	+				-1.4
3,803,814	+				-1.8
3,803,814	+				-1.8
3,803,814	+				-0.5
3,803,814	+				-0.5
3,803,821	+				+1.0
3,803,822	-				-1.0
3,803,822	-				+0.4
3,803,822	-				-0.6
3,803,822	-				+0.3
3,803,822	-				+0.5
3,803,822	-				+0.4
3,803,822	-				-1.7
3,803,822	-				+0.9
3,803,822	-				+0.5
3,803,822	-				+0.4
3,803,822	-				+0.5
3,803,822	-				-1.5
3,803,822	-				+1.1
3,803,822	-				+0.1
3,803,822	-				+0.2
3,803,822	-				+0.6
3,803,829	-				+1.2
3,803,831	+				-2.4
3,803,831	+				-1.2
3,803,834	+				-0.5
3,803,834	+				-0.2
3,803,836	+				-1.1
3,803,839	-				+0.0
3,803,842	-				-0.0
3,803,842	-				-0.3
3,803,850	-				+0.3
3,803,909	-		CCNA_03645	0.16	-1.0
3,803,920	+		CCNA_03645	0.18	+1.1
3,803,925	+		CCNA_03645	0.18	-2.0
3,803,925	-		CCNA_03645	0.18	-0.0
3,803,933	-		CCNA_03645	0.20	+0.1
3,803,933	-				+1.1
3,803,933	-		CCNA_03645	0.20	+0.6
3,803,948	-		CCNA_03645	0.22	+0.0
3,803,951	+		CCNA_03645	0.23	+0.5
3,804,002	-		CCNA_03645	0.31	+0.6
3,804,021	+		CCNA_03645	0.35	+3.1
3,804,050	-		CCNA_03645	0.40	-0.1
3,804,051	+		CCNA_03645	0.40	-1.0
3,804,066	+		CCNA_03645	0.42	+0.4
3,804,071	+		CCNA_03645	0.43	-0.8
3,804,074	-		CCNA_03645	0.44	-0.3
3,804,079	-		CCNA_03645	0.45	-0.4
3,804,092	-		CCNA_03645	0.47	-1.2
3,804,092	-		CCNA_03645	0.47	+0.0
3,804,100	+		CCNA_03645	0.48	-2.7
3,804,111	+		CCNA_03645	0.50	-0.9
3,804,114	-		CCNA_03645	0.51	+2.4
3,804,135	+		CCNA_03645	0.54	+0.1
3,804,141	-		CCNA_03645	0.55	+0.7
3,804,213	-		CCNA_03645	0.67	+0.3
3,804,213	-		CCNA_03645	0.67	-1.1
3,804,236	-		CCNA_03645	0.71	-0.2
3,804,237	+		CCNA_03645	0.71	-2.1
3,804,243	+		CCNA_03645	0.72	-1.1
3,804,245	-		CCNA_03645	0.73	+0.4
3,804,296	+		CCNA_03645	0.81	-1.4
3,804,296	+		CCNA_03645	0.81	-0.2
3,804,329	-		CCNA_03645	0.87	+1.2
3,804,336	-		CCNA_03645	0.88	-1.2
3,804,349	-				-1.0
3,804,394	-				-2.0
3,804,420	-				-0.9
3,804,426	-				+0.2
3,804,470	-				-3.5
3,804,505	+				-0.2
3,804,505	+				-0.7
3,804,508	-				-2.3
3,804,513	-				-3.2
3,804,513	-				-3.0
3,804,513	-				-1.3
3,804,513	-				-2.9
3,804,513	-				-0.7
3,804,513	-				-2.3
3,804,513	-				-2.5
3,804,513	-				-3.1
3,804,513	-				-3.6
3,804,523	-				-2.5
3,804,526	+		CCNA_03646	0.10	+2.1
3,804,534	-		CCNA_03646	0.11	-2.6
3,804,534	-		CCNA_03646	0.11	-1.4
3,804,534	-		CCNA_03646	0.11	-3.3
3,804,534	-		CCNA_03646	0.11	-1.2
3,804,556	+		CCNA_03646	0.13	-1.8
3,804,564	-		CCNA_03646	0.13	-2.6
3,804,578	+		CCNA_03646	0.15	-3.0
3,804,578	+		CCNA_03646	0.15	-2.6
3,804,606	-		CCNA_03646	0.17	-2.3
3,804,606	-		CCNA_03646	0.17	-3.4
3,804,616	-		CCNA_03646	0.18	-1.5
3,804,619	+		CCNA_03646	0.18	-0.2
3,804,636	+		CCNA_03646	0.20	-2.4
3,804,646	+		CCNA_03646	0.21	-2.1
3,804,646	+		CCNA_03646	0.21	+1.1
3,804,654	-		CCNA_03646	0.21	-4.2
3,804,670	+		CCNA_03646	0.23	-0.2
3,804,673	-		CCNA_03646	0.23	-2.2
3,804,691	-		CCNA_03646	0.25	-5.0
3,804,702	-		CCNA_03646	0.26	-1.5
3,804,752	-		CCNA_03646	0.30	-1.1
3,804,752	-		CCNA_03646	0.30	-2.0
3,804,786	+		CCNA_03646	0.33	-1.9
3,804,794	-		CCNA_03646	0.34	-0.2
3,804,794	-		CCNA_03646	0.34	-3.3
3,804,807	-		CCNA_03646	0.35	-1.3
3,804,814	+		CCNA_03646	0.36	-2.6
3,804,814	+		CCNA_03646	0.36	-0.2
3,804,814	+		CCNA_03646	0.36	-1.2
3,804,822	-		CCNA_03646	0.36	-2.8
3,804,822	-		CCNA_03646	0.36	-1.9
3,804,857	-		CCNA_03646	0.40	+0.3
3,804,915	+		CCNA_03646	0.45	-2.0
3,804,935	-		CCNA_03646	0.47	-3.5
3,804,935	-		CCNA_03646	0.47	-2.9
3,804,935	-		CCNA_03646	0.47	-3.2
3,804,985	+		CCNA_03646	0.51	+0.1
3,804,993	-		CCNA_03646	0.52	-3.1
3,805,022	+		CCNA_03646	0.54	-0.9
3,805,036	-		CCNA_03646	0.56	-2.1
3,805,037	-		CCNA_03646	0.56	+0.2
3,805,097	+		CCNA_03646	0.61	-1.4
3,805,105	-		CCNA_03646	0.62	-1.6
3,805,116	+		CCNA_03646	0.63	+0.1
3,805,119	-		CCNA_03646	0.63	-3.6
3,805,171	+		CCNA_03646	0.68	-1.4
3,805,171	+		CCNA_03646	0.68	-0.2
3,805,171	+		CCNA_03646	0.68	-1.9
3,805,171	+		CCNA_03646	0.68	-1.8
3,805,171	+		CCNA_03646	0.68	+0.5
3,805,171	+		CCNA_03646	0.68	-0.7
3,805,171	+		CCNA_03646	0.68	-0.8
3,805,171	+		CCNA_03646	0.68	-1.2
3,805,171	+		CCNA_03646	0.68	-2.9
3,805,171	+		CCNA_03646	0.68	-2.9
3,805,171	+		CCNA_03646	0.68	-3.6
3,805,171	+		CCNA_03646	0.68	-1.1
3,805,171	+		CCNA_03646	0.68	-0.6
3,805,179	-		CCNA_03646	0.68	-1.8
3,805,179	-		CCNA_03646	0.68	-1.3
3,805,179	-		CCNA_03646	0.68	-3.4
3,805,179	-		CCNA_03646	0.68	-0.7
3,805,179	-		CCNA_03646	0.68	-3.2
3,805,179	-		CCNA_03646	0.68	-4.2
3,805,179	-		CCNA_03646	0.68	-0.6
3,805,181	+		CCNA_03646	0.69	-1.4
3,805,189	-		CCNA_03646	0.69	+0.4
3,805,305	+		CCNA_03646	0.80	-1.6
3,805,305	+		CCNA_03646	0.80	-0.7
3,805,313	-		CCNA_03646	0.80	-1.4
3,805,326	-		CCNA_03646	0.82	-3.7
3,805,352	-		CCNA_03646	0.84	-1.3
3,805,377	-		CCNA_03646	0.86	-0.7
3,805,389	-		CCNA_03646	0.87	-1.1
3,805,426	+				-0.7
3,805,480	+				-0.9
3,805,482	-				-0.3
3,805,498	-				-4.0
3,805,535	+				-0.7
3,805,543	-				+0.6
3,805,573	-				+1.8
3,805,592	-				+2.1
3,805,604	+				-0.8
3,805,648	-				-0.8
3,805,682	-				-3.5
3,805,698	+				-1.8
3,805,732	+		CCNA_03647	0.14	-0.1
3,805,737	+		CCNA_03647	0.14	-0.4
3,805,737	+		CCNA_03647	0.14	-0.4
3,805,737	+		CCNA_03647	0.14	-0.4
3,805,740	-		CCNA_03647	0.14	-2.2
3,805,740	-		CCNA_03647	0.14	-0.6
3,805,740	-		CCNA_03647	0.14	-0.2
3,805,750	-		CCNA_03647	0.16	-1.6
3,805,809	+		CCNA_03647	0.22	+1.4
3,805,853	+		CCNA_03647	0.27	-1.1
3,805,854	-		CCNA_03647	0.28	-2.5
3,805,861	-		CCNA_03647	0.28	-2.8
3,805,874	-		CCNA_03647	0.30	-0.1
3,805,874	-		CCNA_03647	0.30	-0.2
3,805,874	-		CCNA_03647	0.30	-0.6
3,805,900	+		CCNA_03647	0.33	-0.1
3,805,909	+		CCNA_03647	0.34	+0.2
3,805,923	+		CCNA_03647	0.35	-0.5
3,805,943	-		CCNA_03647	0.38	-0.2
3,805,953	-				+0.5
3,805,975	-		CCNA_03647	0.41	-0.7
3,805,997	+		CCNA_03647	0.44	-0.2
3,806,057	-		CCNA_03647	0.51	-2.3
3,806,081	+		CCNA_03647	0.53	-0.7
3,806,081	+		CCNA_03647	0.53	+0.6
3,806,081	+		CCNA_03647	0.53	-0.5
3,806,081	+		CCNA_03647	0.53	-3.3
3,806,089	-		CCNA_03647	0.54	-0.3
3,806,089	-		CCNA_03647	0.54	-2.0
3,806,108	-		CCNA_03647	0.57	-0.5
3,806,124	-		CCNA_03647	0.58	-0.5
3,806,142	-		CCNA_03647	0.60	-0.3
3,806,179	+		CCNA_03647	0.65	-1.7
3,806,187	-		CCNA_03647	0.66	+0.6
3,806,191	+		CCNA_03647	0.66	-0.3
3,806,208	-		CCNA_03647	0.68	+2.4
3,806,208	-		CCNA_03647	0.68	-1.1
3,806,208	-		CCNA_03647	0.68	-1.6
3,806,276	-		CCNA_03647	0.76	-0.2
3,806,281	-		CCNA_03647	0.76	-2.5
3,806,307	+		CCNA_03647	0.79	-2.8
3,806,336	+		CCNA_03647	0.83	+0.1
3,806,336	+		CCNA_03647	0.83	-0.6
3,806,341	+		CCNA_03647	0.83	+0.5
3,806,341	+		CCNA_03647	0.83	-0.5
3,806,346	+		CCNA_03647	0.84	-1.9
3,806,370	+		CCNA_03647	0.86	-1.8
3,806,395	-		CCNA_03647	0.89	-1.1
3,806,397	-		CCNA_03647	0.89	-1.5
3,806,397	-		CCNA_03647	0.89	-1.1
3,806,422	-				+0.5
3,806,437	+				-1.5
3,806,437	+				-0.2
3,806,439	+				-0.4
3,806,445	-				-0.8
3,806,482	+				-0.7
3,806,485	-				+0.7