Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03047

Experiment: PYE_noCalcium 25C survival rep1 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 25C survival rep1 12 days
3,199,693	+		CCNA_03045	0.27	+1.1
3,199,767	+		CCNA_03045	0.41	+0.9
3,199,768	+		CCNA_03045	0.41	-0.5
3,199,768	+		CCNA_03045	0.41	-0.3
3,199,775	-		CCNA_03045	0.42	-0.3
3,199,776	-		CCNA_03045	0.42	-1.7
3,199,834	+		CCNA_03045	0.53	-0.7
3,199,859	+		CCNA_03045	0.57	+1.3
3,199,867	+		CCNA_03045	0.59	+1.8
3,199,880	-		CCNA_03045	0.61	-0.2
3,199,882	-				+0.6
3,199,899	+		CCNA_03045	0.64	-0.6
3,199,921	-		CCNA_03045	0.68	+2.2
3,199,923	+		CCNA_03045	0.69	-0.8
3,199,938	+		CCNA_03045	0.72	-0.2
3,199,981	+		CCNA_03045	0.79	+0.3
3,199,989	-		CCNA_03045	0.81	+0.6
3,199,989	-		CCNA_03045	0.81	+0.4
3,200,003	+		CCNA_03045	0.83	+0.5
3,200,003	+		CCNA_03045	0.83	-0.2
3,200,011	-		CCNA_03045	0.85	+1.6
3,200,015	+		CCNA_03045	0.86	+0.1
3,200,057	-				-0.4
3,200,072	+				+0.4
3,200,096	-				-2.9
3,200,162	+		CCNA_03046	0.13	+0.2
3,200,162	+		CCNA_03046	0.13	+0.6
3,200,193	+		CCNA_03046	0.18	+2.6
3,200,203	+		CCNA_03046	0.20	+0.9
3,200,220	-		CCNA_03046	0.23	-1.2
3,200,271	+		CCNA_03046	0.33	-0.9
3,200,279	-		CCNA_03046	0.34	-0.3
3,200,317	-		CCNA_03046	0.41	-1.2
3,200,342	-		CCNA_03046	0.45	-1.2
3,200,364	-		CCNA_03046	0.49	-1.4
3,200,383	+		CCNA_03046	0.53	+0.1
3,200,405	-		CCNA_03046	0.57	-0.6
3,200,406	+		CCNA_03046	0.57	+0.7
3,200,436	+		CCNA_03046	0.62	-0.1
3,200,451	+		CCNA_03046	0.65	-0.0
3,200,459	-		CCNA_03046	0.67	-2.0
3,200,465	+		CCNA_03046	0.68	-0.8
3,200,465	+		CCNA_03046	0.68	+1.2
3,200,465	+		CCNA_03046	0.68	+0.2
3,200,471	-		CCNA_03046	0.69	-1.2
3,200,531	+		CCNA_03046	0.80	-0.2
3,200,532	+		CCNA_03046	0.80	-0.8
3,200,532	+		CCNA_03046	0.80	-0.2
3,200,539	-		CCNA_03046	0.81	-1.4
3,200,539	-		CCNA_03046	0.81	-0.4
3,200,540	-		CCNA_03046	0.81	+0.6
3,200,540	-		CCNA_03046	0.81	-1.2
3,200,540	-		CCNA_03046	0.81	-2.2
3,200,540	-		CCNA_03046	0.81	-1.5
3,200,540	-		CCNA_03046	0.81	-1.6
3,200,569	+		CCNA_03046	0.87	+2.4
3,200,587	+				+0.1
3,200,587	+				+0.0
3,200,587	+				-0.0
3,200,587	+				+0.2
3,200,595	-				+0.2
3,200,595	-				-1.2
3,200,595	-				+0.2
3,200,595	-				-0.7
3,200,595	-				-0.6
3,200,619	+				-0.0
3,200,670	+				+0.2
3,200,678	-				+0.8
3,200,698	+				+0.6
3,200,733	+		CCNA_03047	0.12	-1.4
3,200,738	+		CCNA_03047	0.13	+1.0
3,200,762	+		CCNA_03047	0.16	-1.4
3,200,800	-		CCNA_03047	0.21	-0.8
3,200,834	+		CCNA_03047	0.26	-2.2
3,200,849	+		CCNA_03047	0.28	-1.2
3,200,857	-		CCNA_03047	0.29	-0.7
3,200,857	-		CCNA_03047	0.29	-0.4
3,200,867	-		CCNA_03047	0.30	-0.6
3,200,874	-		CCNA_03047	0.31	-1.3
3,200,883	+		CCNA_03047	0.32	-0.2
3,200,967	+		CCNA_03047	0.43	-2.1
3,200,976	-		CCNA_03047	0.45	-0.9
3,200,978	+		CCNA_03047	0.45	-1.2
3,200,978	+		CCNA_03047	0.45	-2.0
3,200,986	-		CCNA_03047	0.46	-0.7
3,200,986	-		CCNA_03047	0.46	+0.5
3,200,986	-		CCNA_03047	0.46	-1.5
3,200,986	-		CCNA_03047	0.46	+2.2
3,200,986	-		CCNA_03047	0.46	-1.1
3,200,986	-		CCNA_03047	0.46	-0.2
3,200,986	-		CCNA_03047	0.46	+0.2
3,201,015	-		CCNA_03047	0.50	-1.1
3,201,132	-		CCNA_03047	0.65	+0.3
3,201,166	+		CCNA_03047	0.70	+0.6
3,201,166	+		CCNA_03047	0.70	-0.7
3,201,167	+		CCNA_03047	0.70	-0.9
3,201,174	-		CCNA_03047	0.71	+0.4
3,201,220	-		CCNA_03047	0.77	-1.7
3,201,220	-		CCNA_03047	0.77	+0.2
3,201,248	+		CCNA_03047	0.81	-0.0
3,201,248	+		CCNA_03047	0.81	-0.9
3,201,248	+		CCNA_03047	0.81	+1.2
3,201,256	-		CCNA_03047	0.82	+0.7
3,201,256	-		CCNA_03047	0.82	-1.1
3,201,256	-		CCNA_03047	0.82	-0.1
3,201,271	-		CCNA_03047	0.84	-0.1
3,201,306	+		CCNA_03047	0.88	-0.8
3,201,306	+		CCNA_03047	0.88	-1.4
3,201,309	-		CCNA_03047	0.89	+0.7
3,201,314	-		CCNA_03047	0.89	-0.4
3,201,314	-		CCNA_03047	0.89	-0.8
3,201,327	+				-0.6
3,201,335	-				+0.4
3,201,335	-				+0.9
3,201,337	+				+1.2
3,201,337	+				+0.2
3,201,357	-				+0.4
3,201,378	-				-2.3
3,201,400	-				-1.4
3,201,409	+				-1.0
3,201,415	-				+1.2
3,201,417	-				+0.5
3,201,430	-				-0.2
3,201,430	-				+0.5
3,201,441	+				+1.2
3,201,442	-				+0.8
3,201,442	-				+0.7
3,201,514	+				-0.1
3,201,514	+				-0.3
3,201,514	+				+0.6
3,201,514	+				-1.0
3,201,514	+				-0.6
3,201,527	-				-1.8
3,201,538	+				+0.2
3,201,541	-				-1.2
3,201,551	-		CCNA_03048	0.10	+0.7
3,201,583	-		CCNA_03048	0.12	-1.2
3,201,583	-		CCNA_03048	0.12	-1.8
3,201,583	-		CCNA_03048	0.12	-1.1
3,201,583	-		CCNA_03048	0.12	+0.6
3,201,638	+		CCNA_03048	0.16	+0.6
3,201,645	+		CCNA_03048	0.16	+1.1
3,201,646	-		CCNA_03048	0.16	+0.2
3,201,732	+		CCNA_03048	0.22	-1.2
3,201,734	+		CCNA_03048	0.22	-3.4
3,201,741	-		CCNA_03048	0.22	+1.1
3,201,742	-		CCNA_03048	0.22	-2.4
3,201,763	+		CCNA_03048	0.24	+0.6
3,201,765	-		CCNA_03048	0.24	-0.3
3,201,770	+		CCNA_03048	0.24	-1.2
3,201,770	+		CCNA_03048	0.24	-1.7
3,201,770	+		CCNA_03048	0.24	-1.3
3,201,771	-		CCNA_03048	0.24	+0.4
3,201,778	-		CCNA_03048	0.25	-0.9
3,201,778	-		CCNA_03048	0.25	+0.5
3,201,778	-		CCNA_03048	0.25	-1.0
3,201,778	-		CCNA_03048	0.25	+0.5
3,201,778	-		CCNA_03048	0.25	+1.2
3,201,778	-		CCNA_03048	0.25	+0.6
3,201,780	+		CCNA_03048	0.25	-0.3
3,201,946	-		CCNA_03048	0.35	-0.8
3,201,951	-		CCNA_03048	0.36	+0.6
3,201,952	+		CCNA_03048	0.36	+0.4
3,201,952	+		CCNA_03048	0.36	-2.5
3,201,952	+		CCNA_03048	0.36	-1.1
3,201,988	+		CCNA_03048	0.38	-1.6
3,202,011	+		CCNA_03048	0.39	-0.0
3,202,037	+		CCNA_03048	0.41	+0.1
3,202,045	-		CCNA_03048	0.42	+0.4
3,202,045	-		CCNA_03048	0.42	-0.5
3,202,055	-		CCNA_03048	0.42	-0.3
3,202,055	-		CCNA_03048	0.42	-0.1
3,202,089	+		CCNA_03048	0.44	-1.0
3,202,097	-		CCNA_03048	0.45	-1.2
3,202,115	+		CCNA_03048	0.46	-0.4
3,202,123	-		CCNA_03048	0.46	-1.6
3,202,231	-		CCNA_03048	0.53	-0.5
3,202,237	+		CCNA_03048	0.54	+0.1
3,202,266	+		CCNA_03048	0.56	-0.3
3,202,271	+		CCNA_03048	0.56	+2.2
3,202,279	-		CCNA_03048	0.56	-0.2
3,202,290	-		CCNA_03048	0.57	+0.1
3,202,310	+		CCNA_03048	0.58	-1.8
3,202,310	+		CCNA_03048	0.58	-1.8
3,202,310	+		CCNA_03048	0.58	-1.0
3,202,339	+		CCNA_03048	0.60	-0.2
3,202,341	+		CCNA_03048	0.60	-1.9
3,202,364	-		CCNA_03048	0.62	+0.5
3,202,379	-		CCNA_03048	0.63	-0.0
3,202,390	+		CCNA_03048	0.63	+0.7
3,202,390	+		CCNA_03048	0.63	-1.4
3,202,390	+		CCNA_03048	0.63	-0.4
3,202,390	+		CCNA_03048	0.63	-0.2
3,202,390	+		CCNA_03048	0.63	+1.2
3,202,390	+		CCNA_03048	0.63	-0.2