Experiment: PYE_noCalcium 25C survival rep1 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02414 and CCNA_02415 are separated by 213 nucleotides CCNA_02415 and CCNA_02416 are separated by 306 nucleotides CCNA_02416 and CCNA_02417 are separated by 121 nucleotides
CCNA_02414: CCNA_02414 - DadA-related amino acid oxidase, at 2,558,192 to 2,559,208
_02414
CCNA_02415: CCNA_02415 - Xre-family transcriptional regulator, at 2,559,422 to 2,559,829
_02415
CCNA_02416: CCNA_02416 - DNA-binding protein HU, at 2,560,136 to 2,560,414
_02416
CCNA_02417: CCNA_02417 - biotin synthase related domain containing protein, at 2,560,536 to 2,561,765
_02417
Position (kb)
2560
2561 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2559.137 kb on + strand at 2559.138 kb on - strand at 2559.155 kb on + strand at 2559.202 kb on + strand at 2559.222 kb on + strand at 2559.222 kb on + strand at 2559.222 kb on + strand at 2559.222 kb on + strand at 2559.222 kb on + strand at 2559.222 kb on + strand at 2559.222 kb on + strand at 2559.222 kb on + strand at 2559.222 kb on + strand at 2559.222 kb on + strand at 2559.222 kb on + strand at 2559.222 kb on + strand at 2559.222 kb on + strand at 2559.223 kb on - strand at 2559.223 kb on - strand at 2559.230 kb on - strand at 2559.230 kb on - strand at 2559.230 kb on - strand at 2559.230 kb on - strand at 2559.230 kb on - strand at 2559.230 kb on - strand at 2559.230 kb on - strand at 2559.230 kb on - strand at 2559.230 kb on - strand at 2559.230 kb on - strand at 2559.230 kb on - strand at 2559.230 kb on - strand at 2559.230 kb on - strand at 2559.230 kb on - strand at 2559.230 kb on - strand at 2559.230 kb on - strand at 2559.230 kb on - strand at 2559.240 kb on - strand at 2559.253 kb on - strand at 2559.272 kb on - strand at 2559.313 kb on - strand at 2559.327 kb on + strand at 2559.335 kb on - strand at 2559.362 kb on + strand at 2559.441 kb on - strand at 2559.469 kb on - strand, within CCNA_02415 at 2559.506 kb on - strand, within CCNA_02415 at 2559.507 kb on + strand, within CCNA_02415 at 2559.507 kb on + strand, within CCNA_02415 at 2559.507 kb on + strand, within CCNA_02415 at 2559.507 kb on + strand, within CCNA_02415 at 2559.507 kb on + strand, within CCNA_02415 at 2559.515 kb on - strand, within CCNA_02415 at 2559.515 kb on - strand, within CCNA_02415 at 2559.515 kb on - strand, within CCNA_02415 at 2559.515 kb on - strand, within CCNA_02415 at 2559.515 kb on - strand, within CCNA_02415 at 2559.515 kb on - strand, within CCNA_02415 at 2559.539 kb on + strand, within CCNA_02415 at 2559.554 kb on - strand, within CCNA_02415 at 2559.601 kb on + strand, within CCNA_02415 at 2559.601 kb on + strand, within CCNA_02415 at 2559.601 kb on + strand, within CCNA_02415 at 2559.622 kb on + strand, within CCNA_02415 at 2559.664 kb on - strand, within CCNA_02415 at 2559.680 kb on + strand, within CCNA_02415 at 2559.688 kb on - strand, within CCNA_02415 at 2559.697 kb on + strand, within CCNA_02415 at 2559.697 kb on + strand, within CCNA_02415 at 2559.697 kb on + strand, within CCNA_02415 at 2559.697 kb on + strand, within CCNA_02415 at 2559.697 kb on + strand, within CCNA_02415 at 2559.697 kb on + strand, within CCNA_02415 at 2559.697 kb on + strand, within CCNA_02415 at 2559.697 kb on + strand, within CCNA_02415 at 2559.697 kb on + strand, within CCNA_02415 at 2559.705 kb on - strand, within CCNA_02415 at 2559.705 kb on - strand, within CCNA_02415 at 2559.705 kb on - strand, within CCNA_02415 at 2559.705 kb on - strand, within CCNA_02415 at 2559.705 kb on - strand, within CCNA_02415 at 2559.737 kb on - strand, within CCNA_02415 at 2559.739 kb on + strand, within CCNA_02415 at 2559.747 kb on - strand, within CCNA_02415 at 2559.795 kb on - strand at 2559.843 kb on - strand at 2559.843 kb on - strand at 2559.934 kb on + strand at 2559.934 kb on + strand at 2559.942 kb on - strand at 2559.942 kb on - strand at 2559.942 kb on - strand at 2559.942 kb on - strand at 2559.956 kb on + strand at 2559.958 kb on + strand at 2559.958 kb on + strand at 2559.958 kb on + strand at 2559.961 kb on + strand at 2559.966 kb on - strand at 2559.979 kb on + strand at 2560.104 kb on - strand at 2560.112 kb on - strand at 2560.127 kb on - strand at 2560.153 kb on + strand at 2560.198 kb on + strand, within CCNA_02416 at 2560.198 kb on + strand, within CCNA_02416 at 2560.198 kb on + strand, within CCNA_02416 at 2560.198 kb on + strand, within CCNA_02416 at 2560.198 kb on + strand, within CCNA_02416 at 2560.198 kb on + strand, within CCNA_02416 at 2560.206 kb on - strand, within CCNA_02416 at 2560.244 kb on + strand, within CCNA_02416 at 2560.285 kb on + strand, within CCNA_02416 at 2560.293 kb on - strand, within CCNA_02416 at 2560.297 kb on + strand, within CCNA_02416 at 2560.299 kb on - strand, within CCNA_02416 at 2560.304 kb on - strand, within CCNA_02416 at 2560.306 kb on + strand, within CCNA_02416 at 2560.306 kb on + strand, within CCNA_02416 at 2560.325 kb on - strand, within CCNA_02416 at 2560.371 kb on + strand, within CCNA_02416 at 2560.381 kb on + strand, within CCNA_02416 at 2560.416 kb on - strand at 2560.474 kb on + strand at 2560.502 kb on - strand at 2560.612 kb on + strand at 2560.627 kb on - strand at 2560.632 kb on + strand at 2560.656 kb on + strand at 2560.664 kb on - strand, within CCNA_02417 at 2560.673 kb on + strand, within CCNA_02417 at 2560.681 kb on - strand, within CCNA_02417 at 2560.682 kb on - strand, within CCNA_02417 at 2560.714 kb on + strand, within CCNA_02417 at 2560.724 kb on + strand, within CCNA_02417 at 2560.724 kb on + strand, within CCNA_02417 at 2560.745 kb on + strand, within CCNA_02417 at 2560.772 kb on - strand, within CCNA_02417 at 2560.844 kb on - strand, within CCNA_02417 at 2560.845 kb on - strand, within CCNA_02417 at 2560.877 kb on - strand, within CCNA_02417 at 2560.882 kb on - strand, within CCNA_02417 at 2560.888 kb on - strand, within CCNA_02417 at 2560.907 kb on + strand, within CCNA_02417 at 2560.928 kb on - strand, within CCNA_02417 at 2560.954 kb on + strand, within CCNA_02417 at 2560.980 kb on - strand, within CCNA_02417 at 2561.078 kb on + strand, within CCNA_02417 at 2561.085 kb on - strand, within CCNA_02417 at 2561.144 kb on + strand, within CCNA_02417 at 2561.191 kb on + strand, within CCNA_02417 at 2561.196 kb on + strand, within CCNA_02417 at 2561.227 kb on + strand, within CCNA_02417 at 2561.238 kb on + strand, within CCNA_02417 at 2561.245 kb on - strand, within CCNA_02417 at 2561.248 kb on + strand, within CCNA_02417 at 2561.304 kb on - strand, within CCNA_02417 at 2561.304 kb on - strand, within CCNA_02417 at 2561.316 kb on - strand, within CCNA_02417 at 2561.321 kb on - strand, within CCNA_02417 at 2561.372 kb on - strand, within CCNA_02417 at 2561.377 kb on - strand, within CCNA_02417 at 2561.383 kb on + strand, within CCNA_02417 at 2561.387 kb on + strand, within CCNA_02417 at 2561.395 kb on - strand, within CCNA_02417
Per-strain Table
Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep1 12 days remove 2,559,137 + -1.7 2,559,138 - -1.1 2,559,155 + -1.3 2,559,202 + -0.6 2,559,222 + +0.8 2,559,222 + -0.2 2,559,222 + +0.6 2,559,222 + -1.4 2,559,222 + +0.1 2,559,222 + +1.4 2,559,222 + -0.8 2,559,222 + +2.4 2,559,222 + +0.1 2,559,222 + +1.4 2,559,222 + -0.2 2,559,222 + +2.4 2,559,222 + +0.8 2,559,223 - +0.5 2,559,223 - +0.3 2,559,230 - +1.1 2,559,230 - +1.0 2,559,230 - +1.1 2,559,230 - +1.3 2,559,230 - +1.6 2,559,230 - +1.3 2,559,230 - +1.4 2,559,230 - +1.5 2,559,230 - +0.9 2,559,230 - +0.7 2,559,230 - +0.9 2,559,230 - +0.2 2,559,230 - +0.3 2,559,230 - +1.8 2,559,230 - +0.5 2,559,230 - +1.3 2,559,230 - +0.3 2,559,240 - +0.7 2,559,253 - +0.9 2,559,272 - +1.1 2,559,313 - -0.1 2,559,327 + -0.9 2,559,335 - +0.4 2,559,362 + -0.2 2,559,441 - +1.1 2,559,469 - CCNA_02415 0.12 +1.2 2,559,506 - CCNA_02415 0.21 +2.9 2,559,507 + CCNA_02415 0.21 +0.8 2,559,507 + CCNA_02415 0.21 +1.0 2,559,507 + CCNA_02415 0.21 -0.6 2,559,507 + CCNA_02415 0.21 -0.1 2,559,507 + CCNA_02415 0.21 +0.7 2,559,515 - CCNA_02415 0.23 +1.5 2,559,515 - CCNA_02415 0.23 +1.9 2,559,515 - CCNA_02415 0.23 +1.3 2,559,515 - CCNA_02415 0.23 +2.4 2,559,515 - CCNA_02415 0.23 +1.4 2,559,515 - CCNA_02415 0.23 -0.4 2,559,539 + CCNA_02415 0.29 +1.2 2,559,554 - CCNA_02415 0.32 +1.8 2,559,601 + CCNA_02415 0.44 +1.4 2,559,601 + CCNA_02415 0.44 +1.3 2,559,601 + CCNA_02415 0.44 +2.4 2,559,622 + CCNA_02415 0.49 +1.1 2,559,664 - CCNA_02415 0.59 +0.1 2,559,680 + CCNA_02415 0.63 +1.8 2,559,688 - CCNA_02415 0.65 +1.4 2,559,697 + CCNA_02415 0.67 +1.3 2,559,697 + CCNA_02415 0.67 +2.1 2,559,697 + CCNA_02415 0.67 +1.9 2,559,697 + CCNA_02415 0.67 +1.2 2,559,697 + CCNA_02415 0.67 +2.2 2,559,697 + CCNA_02415 0.67 +1.1 2,559,697 + CCNA_02415 0.67 +1.5 2,559,697 + CCNA_02415 0.67 +1.5 2,559,697 + CCNA_02415 0.67 +1.2 2,559,705 - CCNA_02415 0.69 -0.4 2,559,705 - CCNA_02415 0.69 +2.0 2,559,705 - CCNA_02415 0.69 +0.1 2,559,705 - CCNA_02415 0.69 +2.9 2,559,705 - CCNA_02415 0.69 +1.8 2,559,737 - CCNA_02415 0.77 +2.4 2,559,739 + CCNA_02415 0.78 +1.1 2,559,747 - CCNA_02415 0.80 +1.7 2,559,795 - +0.8 2,559,843 - -1.1 2,559,843 - +1.4 2,559,934 + +1.6 2,559,934 + -1.3 2,559,942 - -1.2 2,559,942 - +0.3 2,559,942 - -1.2 2,559,942 - -0.6 2,559,956 + -0.1 2,559,958 + -1.1 2,559,958 + -0.2 2,559,958 + -3.6 2,559,961 + +0.4 2,559,966 - +0.6 2,559,979 + -0.7 2,560,104 - +0.4 2,560,112 - +0.1 2,560,127 - +0.8 2,560,153 + -1.4 2,560,198 + CCNA_02416 0.22 -1.6 2,560,198 + CCNA_02416 0.22 -1.9 2,560,198 + CCNA_02416 0.22 +0.0 2,560,198 + CCNA_02416 0.22 -1.6 2,560,198 + CCNA_02416 0.22 -0.3 2,560,198 + CCNA_02416 0.22 -1.9 2,560,206 - CCNA_02416 0.25 +1.4 2,560,244 + CCNA_02416 0.39 -2.9 2,560,285 + CCNA_02416 0.53 -1.4 2,560,293 - CCNA_02416 0.56 -1.4 2,560,297 + CCNA_02416 0.58 -2.6 2,560,299 - CCNA_02416 0.58 -1.9 2,560,304 - CCNA_02416 0.60 -0.8 2,560,306 + CCNA_02416 0.61 -2.5 2,560,306 + CCNA_02416 0.61 -0.8 2,560,325 - CCNA_02416 0.68 -2.4 2,560,371 + CCNA_02416 0.84 -1.7 2,560,381 + CCNA_02416 0.88 -1.7 2,560,416 - +0.8 2,560,474 + -1.0 2,560,502 - +0.2 2,560,612 + +0.4 2,560,627 - +2.4 2,560,632 + -0.8 2,560,656 + +1.7 2,560,664 - CCNA_02417 0.10 -1.9 2,560,673 + CCNA_02417 0.11 +0.6 2,560,681 - CCNA_02417 0.12 +1.1 2,560,682 - CCNA_02417 0.12 -0.3 2,560,714 + CCNA_02417 0.14 -2.9 2,560,724 + CCNA_02417 0.15 -0.6 2,560,724 + CCNA_02417 0.15 -0.2 2,560,745 + CCNA_02417 0.17 -1.4 2,560,772 - CCNA_02417 0.19 +0.4 2,560,844 - CCNA_02417 0.25 +3.1 2,560,845 - CCNA_02417 0.25 -0.8 2,560,877 - CCNA_02417 0.28 +0.2 2,560,882 - CCNA_02417 0.28 +0.1 2,560,888 - CCNA_02417 0.29 -0.8 2,560,907 + CCNA_02417 0.30 +0.8 2,560,928 - CCNA_02417 0.32 +0.7 2,560,954 + CCNA_02417 0.34 +1.1 2,560,980 - CCNA_02417 0.36 +0.2 2,561,078 + CCNA_02417 0.44 -0.8 2,561,085 - CCNA_02417 0.45 -1.7 2,561,144 + CCNA_02417 0.49 -2.2 2,561,191 + CCNA_02417 0.53 -0.2 2,561,196 + CCNA_02417 0.54 +0.3 2,561,227 + CCNA_02417 0.56 +0.6 2,561,238 + CCNA_02417 0.57 -0.9 2,561,245 - CCNA_02417 0.58 +0.2 2,561,248 + CCNA_02417 0.58 +0.0 2,561,304 - CCNA_02417 0.62 +0.7 2,561,304 - CCNA_02417 0.62 -1.5 2,561,316 - CCNA_02417 0.63 +0.2 2,561,321 - CCNA_02417 0.64 -0.7 2,561,372 - CCNA_02417 0.68 +0.2 2,561,377 - CCNA_02417 0.68 +0.4 2,561,383 + CCNA_02417 0.69 +0.3 2,561,387 + CCNA_02417 0.69 +2.1 2,561,395 - CCNA_02417 0.70 -1.2
Or see this region's nucleotide sequence