Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01387

Experiment: PYE_noCalcium 25C survival rep1 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 25C survival rep1 12 days
1,502,961	+		CCNA_01385	0.89	+1.3
1,502,969	-				+1.0
1,502,995	+				+0.3
1,502,995	+				+0.8
1,503,003	-				-0.6
1,503,025	-				+2.6
1,503,032	+				+0.2
1,503,040	-				+0.2
1,503,065	+				-0.2
1,503,093	+				-0.3
1,503,116	+				-2.4
1,503,124	-				+0.3
1,503,165	-				-1.8
1,503,173	-		CCNA_01386	0.10	-0.0
1,503,214	-		CCNA_01386	0.17	+0.5
1,503,214	-		CCNA_01386	0.17	-0.2
1,503,269	-		CCNA_01386	0.25	-1.4
1,503,329	-		CCNA_01386	0.35	+0.4
1,503,349	-		CCNA_01386	0.38	-1.7
1,503,367	+		CCNA_01386	0.41	-0.1
1,503,367	+		CCNA_01386	0.41	-0.7
1,503,367	+		CCNA_01386	0.41	-4.4
1,503,367	+		CCNA_01386	0.41	-3.1
1,503,375	-		CCNA_01386	0.42	-0.9
1,503,375	-		CCNA_01386	0.42	-1.0
1,503,410	-		CCNA_01386	0.47	-1.4
1,503,418	+		CCNA_01386	0.49	+1.9
1,503,421	-		CCNA_01386	0.49	-0.4
1,503,439	+		CCNA_01386	0.52	-1.4
1,503,444	-		CCNA_01386	0.53	+0.2
1,503,460	+		CCNA_01386	0.55	-0.2
1,503,460	+		CCNA_01386	0.55	+0.2
1,503,460	+				+0.0
1,503,501	-		CCNA_01386	0.62	-0.4
1,503,503	+		CCNA_01386	0.62	-0.8
1,503,582	+		CCNA_01386	0.74	-0.8
1,503,595	+		CCNA_01386	0.76	-2.1
1,503,597	-		CCNA_01386	0.76	+0.1
1,503,625	-		CCNA_01386	0.81	+0.4
1,503,630	-		CCNA_01386	0.82	-0.6
1,503,631	+		CCNA_01386	0.82	+1.3
1,503,632	+		CCNA_01386	0.82	-1.2
1,503,632	+		CCNA_01386	0.82	+0.5
1,503,632	+		CCNA_01386	0.82	+0.8
1,503,632	+		CCNA_01386	0.82	+1.2
1,503,632	+		CCNA_01386	0.82	+1.2
1,503,640	-		CCNA_01386	0.83	-0.1
1,503,640	-		CCNA_01386	0.83	-0.7
1,503,640	-		CCNA_01386	0.83	+0.1
1,503,645	-		CCNA_01386	0.84	-0.7
1,503,649	+		CCNA_01386	0.85	-1.1
1,503,654	+		CCNA_01386	0.85	-0.2
1,503,654	+		CCNA_01386	0.85	-1.4
1,503,657	-		CCNA_01386	0.86	-0.9
1,503,662	-		CCNA_01386	0.87	-0.5
1,503,662	-		CCNA_01386	0.87	-0.0
1,503,679	-		CCNA_01386	0.89	+0.9
1,503,712	-				+0.0
1,503,732	-				-0.4
1,503,737	+				-0.2
1,503,780	+				+0.0
1,503,805	-				+0.4
1,503,823	-				-1.8
1,503,824	-				-1.6
1,503,850	+				-0.7
1,503,860	+				-1.7
1,503,902	+				-0.9
1,503,909	+				-0.4
1,503,909	+				-0.8
1,503,910	-				+1.3
1,503,917	-				-1.1
1,503,973	+				+1.9
1,504,008	+				+0.1
1,504,012	+				+0.4
1,504,019	-				-1.0
1,504,019	-				-1.1
1,504,019	-				+1.1
1,504,046	+				+1.1
1,504,054	-				-1.8
1,504,090	+		CCNA_01387	0.13	+1.0
1,504,090	+		CCNA_01387	0.13	+0.9
1,504,090	+		CCNA_01387	0.13	+0.6
1,504,146	+		CCNA_01387	0.17	+1.9
1,504,146	+		CCNA_01387	0.17	+0.9
1,504,146	+		CCNA_01387	0.17	+1.0
1,504,146	+		CCNA_01387	0.17	+1.3
1,504,146	+		CCNA_01387	0.17	+1.3
1,504,154	-		CCNA_01387	0.18	-2.1
1,504,154	-		CCNA_01387	0.18	-0.5
1,504,177	-		CCNA_01387	0.20	+0.4
1,504,193	+		CCNA_01387	0.21	+1.1
1,504,193	+		CCNA_01387	0.21	+1.8
1,504,201	-		CCNA_01387	0.22	+0.6
1,504,206	-		CCNA_01387	0.22	+1.0
1,504,243	-		CCNA_01387	0.25	+0.3
1,504,244	-		CCNA_01387	0.25	-0.5
1,504,276	-		CCNA_01387	0.28	+0.6
1,504,286	-		CCNA_01387	0.29	+0.4
1,504,359	+		CCNA_01387	0.34	+1.7
1,504,460	+		CCNA_01387	0.42	+0.6
1,504,545	+		CCNA_01387	0.49	+0.1
1,504,596	-		CCNA_01387	0.53	-0.4
1,504,610	+		CCNA_01387	0.54	-0.1
1,504,610	+		CCNA_01387	0.54	+1.9
1,504,610	+		CCNA_01387	0.54	+1.6
1,504,634	+		CCNA_01387	0.56	+1.3
1,504,634	+		CCNA_01387	0.56	+1.6
1,504,639	+		CCNA_01387	0.57	+1.6
1,504,639	+		CCNA_01387	0.57	+1.3
1,504,639	+		CCNA_01387	0.57	+1.8
1,504,653	+		CCNA_01387	0.58	+1.4
1,504,653	+		CCNA_01387	0.58	+0.8
1,504,662	-		CCNA_01387	0.59	+2.6
1,504,667	+		CCNA_01387	0.59	+1.0
1,504,686	+		CCNA_01387	0.61	+1.2
1,504,706	+		CCNA_01387	0.62	+1.2
1,504,729	-		CCNA_01387	0.64	-0.4
1,504,741	-		CCNA_01387	0.65	-0.7
1,504,742	-		CCNA_01387	0.65	+0.8
1,504,780	+		CCNA_01387	0.68	-0.9
1,504,788	-		CCNA_01387	0.69	-0.2
1,504,804	-		CCNA_01387	0.70	-1.9
1,504,806	+		CCNA_01387	0.70	+0.9
1,504,811	+		CCNA_01387	0.71	+0.4
1,504,811	+		CCNA_01387	0.71	+0.8
1,504,811	+		CCNA_01387	0.71	+1.2
1,504,811	+		CCNA_01387	0.71	+1.3
1,504,811	+		CCNA_01387	0.71	+1.0
1,504,811	+		CCNA_01387	0.71	+1.5
1,504,811	+		CCNA_01387	0.71	+1.2
1,504,813	-		CCNA_01387	0.71	+0.6
1,504,814	-		CCNA_01387	0.71	-0.7
1,504,814	-		CCNA_01387	0.71	+0.6
1,504,819	+		CCNA_01387	0.71	+1.0
1,504,819	-		CCNA_01387	0.71	+1.6
1,504,819	-		CCNA_01387	0.71	+1.3
1,504,819	-		CCNA_01387	0.71	-0.2
1,504,819	-		CCNA_01387	0.71	+0.0
1,504,821	+		CCNA_01387	0.71	+1.6
1,504,826	+		CCNA_01387	0.72	+0.1
1,504,826	+		CCNA_01387	0.72	+0.3
1,504,834	-		CCNA_01387	0.72	+0.6
1,504,846	-		CCNA_01387	0.73	+0.1
1,504,887	-		CCNA_01387	0.77	+0.2
1,504,894	+		CCNA_01387	0.77	+0.3
1,504,911	+		CCNA_01387	0.79	+1.3
1,504,919	-		CCNA_01387	0.79	+1.8
1,504,921	+		CCNA_01387	0.79	+1.2
1,504,921	+		CCNA_01387	0.79	+0.5
1,504,921	+		CCNA_01387	0.79	+3.3
1,504,926	+		CCNA_01387	0.80	+1.2
1,504,926	+		CCNA_01387	0.80	+1.0
1,504,928	+		CCNA_01387	0.80	+0.6
1,504,928	+		CCNA_01387	0.80	+1.3
1,504,929	-		CCNA_01387	0.80	+0.3
1,504,929	-		CCNA_01387	0.80	+0.3
1,504,936	-		CCNA_01387	0.81	-0.0
1,504,943	+		CCNA_01387	0.81	+1.5
1,504,943	+		CCNA_01387	0.81	+0.9
1,504,943	+		CCNA_01387	0.81	+0.8
1,504,951	-		CCNA_01387	0.82	-1.1
1,504,951	-		CCNA_01387	0.82	-1.2
1,504,951	-		CCNA_01387	0.82	+1.4
1,504,951	-		CCNA_01387	0.82	+1.1
1,504,957	-		CCNA_01387	0.82	+0.3
1,505,013	-		CCNA_01387	0.87	+0.7
1,505,015	+		CCNA_01387	0.87	+1.8
1,505,015	+		CCNA_01387	0.87	+1.6
1,505,015	+		CCNA_01387	0.87	+1.6
1,505,023	-		CCNA_01387	0.88	-0.1
1,505,023	-		CCNA_01387	0.88	+1.8
1,505,023	-		CCNA_01387	0.88	+1.0
1,505,031	+		CCNA_01387	0.88	+1.8
1,505,052	+		CCNA_01387	0.90	+1.7
1,505,052	+		CCNA_01387	0.90	+1.0
1,505,060	-				+2.2
1,505,138	-				+2.3
1,505,154	-				-0.5
1,505,154	-				+1.7
1,505,154	-				+2.3
1,505,163	+				+0.2
1,505,171	-				+2.7
1,505,187	+				+1.1
1,505,195	-				+2.3
1,505,213	-				+0.5
1,505,225	-				+0.0
1,505,243	+				+0.3
1,505,258	+				+0.3
1,505,280	+				+0.0
1,505,372	-		CCNA_01388	0.18	-0.7
1,505,389	+		CCNA_01388	0.19	+0.8
1,505,397	-		CCNA_01388	0.20	-2.0
1,505,435	+		CCNA_01388	0.24	-1.9
1,505,480	+		CCNA_01388	0.28	-0.5
1,505,480	+		CCNA_01388	0.28	-1.8
1,505,560	-		CCNA_01388	0.35	-1.3
1,505,563	-		CCNA_01388	0.35	+0.7
1,505,589	-		CCNA_01388	0.38	+0.5
1,505,663	+		CCNA_01388	0.45	+0.1
1,505,671	-		CCNA_01388	0.46	+0.3
1,505,737	-		CCNA_01388	0.52	-2.1
1,505,757	+		CCNA_01388	0.54	-1.4
1,505,764	+		CCNA_01388	0.54	+0.0
1,505,790	-		CCNA_01388	0.57	-0.4
1,505,802	+		CCNA_01388	0.58	+0.1
1,505,810	-		CCNA_01388	0.59	-0.8
1,505,903	+		CCNA_01388	0.67	+2.3
1,505,903	+		CCNA_01388	0.67	+1.1
1,505,909	+		CCNA_01388	0.68	-0.8
1,505,917	-		CCNA_01388	0.69	+0.7
1,505,940	-		CCNA_01388	0.71	-0.3
1,505,954	-		CCNA_01388	0.72	-0.5
1,505,958	+		CCNA_01388	0.72	-0.4
1,506,024	+		CCNA_01388	0.79	+0.5
1,506,031	-		CCNA_01388	0.79	-0.1
1,506,078	+		CCNA_01388	0.84	-1.0
1,506,126	+		CCNA_01388	0.88	-1.8
1,506,152	-				+2.3