Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01196

Experiment: PYE_noCalcium 25C survival rep1 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 25C survival rep1 12 days
1,318,346	+		CCNA_01195	0.24	+0.7
1,318,346	+		CCNA_01195	0.24	-0.7
1,318,346	+		CCNA_01195	0.24	-1.4
1,318,346	+		CCNA_01195	0.24	-0.1
1,318,346	+		CCNA_01195	0.24	-2.0
1,318,346	+		CCNA_01195	0.24	+0.3
1,318,346	+		CCNA_01195	0.24	+0.7
1,318,346	+		CCNA_01195	0.24	-0.1
1,318,346	+		CCNA_01195	0.24	-0.9
1,318,346	+		CCNA_01195	0.24	+0.7
1,318,347	-		CCNA_01195	0.24	-2.4
1,318,349	-		CCNA_01195	0.24	+1.3
1,318,354	-		CCNA_01195	0.24	-2.1
1,318,354	-		CCNA_01195	0.24	-1.3
1,318,354	-		CCNA_01195	0.24	-0.5
1,318,354	-		CCNA_01195	0.24	-2.6
1,318,354	-		CCNA_01195	0.24	-2.4
1,318,354	-		CCNA_01195	0.24	-3.1
1,318,376	-		CCNA_01195	0.27	-1.5
1,318,423	+		CCNA_01195	0.31	+0.3
1,318,431	-		CCNA_01195	0.32	-0.1
1,318,431	-		CCNA_01195	0.32	-2.1
1,318,441	+		CCNA_01195	0.33	-1.9
1,318,446	+		CCNA_01195	0.33	+0.3
1,318,448	+		CCNA_01195	0.34	-0.3
1,318,449	-		CCNA_01195	0.34	-0.5
1,318,456	-		CCNA_01195	0.34	-3.7
1,318,456	-		CCNA_01195	0.34	-1.9
1,318,469	-		CCNA_01195	0.36	-5.4
1,318,479	-		CCNA_01195	0.37	-4.5
1,318,495	-		CCNA_01195	0.38	-2.3
1,318,496	-		CCNA_01195	0.38	-3.7
1,318,496	-		CCNA_01195	0.38	-3.1
1,318,508	+		CCNA_01195	0.39	-0.1
1,318,516	-		CCNA_01195	0.40	-1.3
1,318,533	+		CCNA_01195	0.42	-0.9
1,318,694	-		CCNA_01195	0.58	-1.8
1,318,719	+		CCNA_01195	0.60	+1.3
1,318,722	+		CCNA_01195	0.60	+2.3
1,318,788	-		CCNA_01195	0.67	-1.3
1,318,794	-		CCNA_01195	0.67	-2.4
1,318,802	+		CCNA_01195	0.68	-0.1
1,318,802	+		CCNA_01195	0.68	+2.3
1,318,802	+		CCNA_01195	0.68	+1.3
1,318,810	-		CCNA_01195	0.69	-2.4
1,318,875	-				+2.3
1,318,875	-		CCNA_01195	0.75	-1.5
1,318,877	+		CCNA_01195	0.75	+2.3
1,318,946	-		CCNA_01195	0.82	-1.3
1,318,965	+		CCNA_01195	0.84	-2.9
1,318,972	+		CCNA_01195	0.85	-1.3
1,318,973	-		CCNA_01195	0.85	-3.2
1,318,973	-		CCNA_01195	0.85	-4.1
1,319,035	+				-0.1
1,319,037	+				+0.7
1,319,086	+				-1.9
1,319,094	-				-0.7
1,319,095	-				-2.6
1,319,109	-				+0.8
1,319,110	+				+2.3
1,319,151	-				-0.1
1,319,167	-				+0.3
1,319,180	+				-1.2
1,319,191	+				+1.4
1,319,204	-				-0.1
1,319,205	-				-1.7
1,319,212	-				+0.6
1,319,243	-				+0.4
1,319,243	-				+0.9
1,319,243	-				+1.5
1,319,248	-				-2.2
1,319,252	+				-0.3
1,319,260	+				-1.6
1,319,260	-				+0.1
1,319,268	-				-0.7
1,319,268	-				-1.1
1,319,292	-				+3.6
1,319,292	-				-1.5
1,319,308	-				+0.9
1,319,350	-				+3.5
1,319,375	-				-2.0
1,319,407	-				-0.7
1,319,408	-				-0.3
1,319,420	-				+1.5
1,319,431	-				-1.5
1,319,433	-				+1.3
1,319,435	+				+0.6
1,319,476	+		CCNA_01196	0.10	-0.7
1,319,476	+		CCNA_01196	0.10	-0.2
1,319,476	+		CCNA_01196	0.10	+0.4
1,319,482	+		CCNA_01196	0.11	-0.4
1,319,537	-		CCNA_01196	0.14	-0.1
1,319,541	-		CCNA_01196	0.14	-0.4
1,319,556	-		CCNA_01196	0.14	-0.8
1,319,578	-		CCNA_01196	0.16	-0.3
1,319,585	-		CCNA_01196	0.16	+0.7
1,319,587	+		CCNA_01196	0.16	+0.7
1,319,597	+		CCNA_01196	0.17	-0.1
1,319,630	+		CCNA_01196	0.18	+1.1
1,319,649	-		CCNA_01196	0.19	-0.6
1,319,707	-		CCNA_01196	0.22	+1.4
1,319,707	-		CCNA_01196	0.22	+0.8
1,319,707	-		CCNA_01196	0.22	+1.1
1,319,707	-		CCNA_01196	0.22	+1.3
1,319,722	+		CCNA_01196	0.23	+0.6
1,319,763	-		CCNA_01196	0.25	+0.7
1,319,864	+		CCNA_01196	0.30	-0.1
1,319,889	-		CCNA_01196	0.31	+0.3
1,319,921	+		CCNA_01196	0.33	+0.9
1,319,962	+		CCNA_01196	0.35	-0.1
1,320,004	+		CCNA_01196	0.37	-0.5
1,320,004	+		CCNA_01196	0.37	-0.4
1,320,012	-		CCNA_01196	0.38	-2.3
1,320,012	-		CCNA_01196	0.38	-0.1
1,320,013	-		CCNA_01196	0.38	-1.1
1,320,039	+		CCNA_01196	0.39	-1.8
1,320,039	+		CCNA_01196	0.39	+0.2
1,320,061	+		CCNA_01196	0.40	+0.7
1,320,061	+		CCNA_01196	0.40	-0.3
1,320,061	+		CCNA_01196	0.40	+0.6
1,320,061	+		CCNA_01196	0.40	-0.7
1,320,069	-		CCNA_01196	0.40	-2.3
1,320,071	+		CCNA_01196	0.41	+1.2
1,320,077	-		CCNA_01196	0.41	-0.9
1,320,096	+		CCNA_01196	0.42	+0.4
1,320,123	+		CCNA_01196	0.43	+1.1
1,320,123	+		CCNA_01196	0.43	-3.7
1,320,123	+		CCNA_01196	0.43	-0.5
1,320,131	-		CCNA_01196	0.44	-0.7
1,320,131	-		CCNA_01196	0.44	-0.5
1,320,135	+		CCNA_01196	0.44	+0.3
1,320,158	-		CCNA_01196	0.45	-1.2
1,320,158	-		CCNA_01196	0.45	-1.6
1,320,252	+		CCNA_01196	0.50	+1.3
1,320,267	-		CCNA_01196	0.50	+0.7
1,320,297	+		CCNA_01196	0.52	+0.7
1,320,305	-		CCNA_01196	0.52	-0.9
1,320,306	+		CCNA_01196	0.52	-0.6
1,320,314	-		CCNA_01196	0.53	+1.5
1,320,322	+		CCNA_01196	0.53	-1.1
1,320,322	+		CCNA_01196	0.53	-1.1
1,320,330	-		CCNA_01196	0.54	+0.7
1,320,343	+		CCNA_01196	0.54	+0.1
1,320,346	-		CCNA_01196	0.54	-0.5
1,320,350	+		CCNA_01196	0.55	-0.7
1,320,361	+		CCNA_01196	0.55	+1.8
1,320,449	-		CCNA_01196	0.60	-1.2
1,320,452	+		CCNA_01196	0.60	-0.5
1,320,559	+		CCNA_01196	0.65	+0.5
1,320,567	-		CCNA_01196	0.66	+0.3
1,320,580	-		CCNA_01196	0.66	-1.9
1,320,584	+		CCNA_01196	0.66	-0.5
1,320,603	-		CCNA_01196	0.67	-1.3
1,320,618	+		CCNA_01196	0.68	+1.2
1,320,618	+		CCNA_01196	0.68	+0.4
1,320,618	+		CCNA_01196	0.68	+0.2
1,320,620	+		CCNA_01196	0.68	+0.1
1,320,638	-		CCNA_01196	0.69	+0.3
1,320,641	+		CCNA_01196	0.69	-0.7
1,320,662	+		CCNA_01196	0.70	+0.8
1,320,667	+		CCNA_01196	0.71	+0.3
1,320,667	+		CCNA_01196	0.71	-0.5
1,320,720	+		CCNA_01196	0.73	-0.5
1,320,800	+		CCNA_01196	0.77	-0.5
1,320,808	-		CCNA_01196	0.78	-0.8
1,320,824	-		CCNA_01196	0.79	+0.3
1,320,842	+		CCNA_01196	0.79	+0.8
1,320,850	-		CCNA_01196	0.80	-1.1
1,320,873	-		CCNA_01196	0.81	-0.4
1,320,875	+		CCNA_01196	0.81	+0.9
1,320,880	+		CCNA_01196	0.81	+0.4
1,320,882	+		CCNA_01196	0.81	-0.1
1,320,891	-		CCNA_01196	0.82	+0.1
1,320,954	-		CCNA_01196	0.85	-0.3
1,320,961	+		CCNA_01196	0.85	+0.9
1,320,966	+		CCNA_01196	0.86	+0.1
1,320,967	+		CCNA_01196	0.86	-0.9
1,320,971	+		CCNA_01196	0.86	+1.3
1,320,971	+		CCNA_01196	0.86	-1.7
1,320,971	+		CCNA_01196	0.86	+0.1
1,321,008	+		CCNA_01196	0.88	-0.6
1,321,013	+		CCNA_01196	0.88	+0.5
1,321,018	+		CCNA_01196	0.88	-0.5
1,321,018	+		CCNA_01196	0.88	-0.3
1,321,018	+		CCNA_01196	0.88	-0.7
1,321,026	+		CCNA_01196	0.89	-0.2
1,321,031	-		CCNA_01196	0.89	-2.3
1,321,036	-		CCNA_01196	0.89	-0.3
1,321,060	-				+1.1
1,321,067	+				+0.0
1,321,067	+				-1.0
1,321,075	-				+0.5
1,321,089	+				+1.5
1,321,092	-				+0.5
1,321,102	+				+0.3
1,321,102	+				+1.3
1,321,102	+				+0.1
1,321,102	+				-0.5
1,321,102	+				+0.5
1,321,110	-				-1.7
1,321,110	-				+1.3
1,321,123	+				-0.3
1,321,150	+				-0.3
1,321,150	+				-1.4
1,321,157	+				+0.1
1,321,174	+				+0.3
1,321,182	-				-1.2
1,321,219	+				-1.4
1,321,219	+				-1.9
1,321,227	-				+0.9
1,321,230	-				-1.1
1,321,241	+				-0.6
1,321,241	+				-0.7
1,321,285	-				-0.2
1,321,337	+		CCNA_01197	0.22	+0.4
1,321,337	+		CCNA_01197	0.22	-2.5
1,321,337	+		CCNA_01197	0.22	-0.5
1,321,345	-		CCNA_01197	0.26	-1.4
1,321,345	-		CCNA_01197	0.26	+1.3
1,321,352	+		CCNA_01197	0.30	+1.5
1,321,355	-		CCNA_01197	0.32	-0.1
1,321,357	+		CCNA_01197	0.33	+1.0
1,321,367	-		CCNA_01197	0.39	+2.3
1,321,369	+		CCNA_01197	0.40	+0.2
1,321,385	+		CCNA_01197	0.50	+0.5
1,321,411	+		CCNA_01197	0.65	-2.6
1,321,445	+		CCNA_01197	0.85	-1.2
1,321,464	-				+0.7
1,321,485	-				-1.7
1,321,485	-				-0.3
1,321,520	+				-1.3
1,321,528	-				-1.4
1,321,530	+				-0.9
1,321,574	-				+0.6
1,321,579	+				-0.9
1,321,579	+				-2.9
1,321,580	-				-0.3
1,321,587	-				-0.8
1,321,587	-				-0.3
1,321,622	+				-0.9
1,321,657	+				-0.5
1,321,661	-				-0.3
1,321,691	-				-1.5
1,321,712	+				+2.0
1,321,777	-		CCNA_01198	0.12	+1.3
1,321,780	+		CCNA_01198	0.12	+0.5
1,321,801	+		CCNA_01198	0.15	+1.8
1,321,824	-				+0.3
1,321,831	-		CCNA_01198	0.18	-2.3
1,321,866	+		CCNA_01198	0.22	+1.7
1,321,874	-		CCNA_01198	0.23	+0.9
1,321,877	+		CCNA_01198	0.23	+1.4
1,321,929	-		CCNA_01198	0.29	+1.3
1,321,942	-		CCNA_01198	0.30	+0.9
1,321,942	-		CCNA_01198	0.30	+2.1
1,321,949	+		CCNA_01198	0.31	+0.4
1,321,957	-		CCNA_01198	0.32	-1.4
1,322,005	+		CCNA_01198	0.37	+1.9
1,322,011	+		CCNA_01198	0.38	-0.3
1,322,013	-		CCNA_01198	0.38	+1.5
1,322,022	-		CCNA_01198	0.39	+0.3
1,322,025	-		CCNA_01198	0.40	+1.7
1,322,059	+		CCNA_01198	0.43	+1.0
1,322,059	-		CCNA_01198	0.43	+0.9
1,322,115	-		CCNA_01198	0.50	+0.7
1,322,186	+		CCNA_01198	0.57	+1.4
1,322,214	+		CCNA_01198	0.60	+0.8