Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00866

Experiment: PYE_noCalcium 25C survival rep1 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00865 and CCNA_00866 are separated by 16 nucleotidesCCNA_00866 and CCNA_00867 are separated by 186 nucleotidesCCNA_00867 and CCNA_03889 are separated by 254 nucleotides CCNA_00865: CCNA_00865 - alpha-ketoglutaric semialdehyde dehydrogenase xylA, at 943,210 to 944,646 _00865 CCNA_00866: CCNA_00866 - 2-keto-3-deoxyxylonate dehydratase XylX (EC 4.2.1.141) (from data), at 944,663 to 945,817 _00866 CCNA_00867: CCNA_00867 - hypothetical protein, at 946,004 to 946,492 _00867 CCNA_03889: CCNA_03889 - hypothetical protein, at 946,747 to 947,268 _03889 Position (kb) 944 945 946Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 943.690 kb on - strand, within CCNA_00865at 943.702 kb on + strand, within CCNA_00865at 943.702 kb on - strand, within CCNA_00865at 943.723 kb on - strand, within CCNA_00865at 943.802 kb on + strand, within CCNA_00865at 943.802 kb on + strand, within CCNA_00865at 943.802 kb on + strand, within CCNA_00865at 943.807 kb on + strand, within CCNA_00865at 943.834 kb on + strand, within CCNA_00865at 943.842 kb on - strand, within CCNA_00865at 943.856 kb on + strand, within CCNA_00865at 943.858 kb on + strand, within CCNA_00865at 943.863 kb on + strand, within CCNA_00865at 943.863 kb on + strand, within CCNA_00865at 943.868 kb on + strand, within CCNA_00865at 943.873 kb on + strand, within CCNA_00865at 943.876 kb on - strand, within CCNA_00865at 943.904 kb on + strand, within CCNA_00865at 943.921 kb on + strand, within CCNA_00865at 943.922 kb on - strand, within CCNA_00865at 943.926 kb on + strand, within CCNA_00865at 944.003 kb on + strand, within CCNA_00865at 944.003 kb on + strand, within CCNA_00865at 944.086 kb on - strand, within CCNA_00865at 944.126 kb on + strand, within CCNA_00865at 944.134 kb on - strand, within CCNA_00865at 944.134 kb on - strand, within CCNA_00865at 944.141 kb on + strand, within CCNA_00865at 944.205 kb on - strand, within CCNA_00865at 944.209 kb on + strand, within CCNA_00865at 944.212 kb on - strand, within CCNA_00865at 944.214 kb on + strand, within CCNA_00865at 944.214 kb on + strand, within CCNA_00865at 944.214 kb on + strand, within CCNA_00865at 944.222 kb on - strand, within CCNA_00865at 944.222 kb on - strand, within CCNA_00865at 944.222 kb on - strand, within CCNA_00865at 944.242 kb on + strand, within CCNA_00865at 944.243 kb on - strand, within CCNA_00865at 944.270 kb on + strand, within CCNA_00865at 944.270 kb on + strand, within CCNA_00865at 944.278 kb on + strand, within CCNA_00865at 944.293 kb on + strand, within CCNA_00865at 944.293 kb on + strand, within CCNA_00865at 944.298 kb on + strand, within CCNA_00865at 944.301 kb on - strand, within CCNA_00865at 944.301 kb on - strand, within CCNA_00865at 944.365 kb on + strand, within CCNA_00865at 944.374 kb on - strandat 944.408 kb on - strand, within CCNA_00865at 944.408 kb on - strand, within CCNA_00865at 944.427 kb on + strand, within CCNA_00865at 944.497 kb on - strand, within CCNA_00865at 944.519 kb on + strandat 944.527 kb on - strandat 944.536 kb on + strandat 944.558 kb on + strandat 944.574 kb on + strandat 944.574 kb on + strandat 944.636 kb on - strandat 944.669 kb on - strandat 944.698 kb on + strandat 944.701 kb on - strandat 944.706 kb on - strandat 944.730 kb on - strandat 944.816 kb on - strand, within CCNA_00866at 944.818 kb on + strand, within CCNA_00866at 944.842 kb on - strand, within CCNA_00866at 944.901 kb on + strand, within CCNA_00866at 944.901 kb on + strand, within CCNA_00866at 944.901 kb on + strand, within CCNA_00866at 944.901 kb on + strand, within CCNA_00866at 944.901 kb on + strand, within CCNA_00866at 944.909 kb on - strand, within CCNA_00866at 944.909 kb on - strand, within CCNA_00866at 944.909 kb on - strand, within CCNA_00866at 944.909 kb on - strand, within CCNA_00866at 944.909 kb on - strand, within CCNA_00866at 944.942 kb on - strand, within CCNA_00866at 944.957 kb on - strand, within CCNA_00866at 944.968 kb on + strand, within CCNA_00866at 944.981 kb on - strandat 945.086 kb on - strand, within CCNA_00866at 945.089 kb on - strand, within CCNA_00866at 945.101 kb on + strand, within CCNA_00866at 945.109 kb on - strand, within CCNA_00866at 945.136 kb on + strand, within CCNA_00866at 945.144 kb on - strand, within CCNA_00866at 945.149 kb on + strand, within CCNA_00866at 945.167 kb on + strand, within CCNA_00866at 945.167 kb on + strand, within CCNA_00866at 945.167 kb on + strand, within CCNA_00866at 945.172 kb on + strand, within CCNA_00866at 945.175 kb on - strand, within CCNA_00866at 945.175 kb on - strand, within CCNA_00866at 945.175 kb on - strand, within CCNA_00866at 945.175 kb on - strand, within CCNA_00866at 945.191 kb on + strand, within CCNA_00866at 945.237 kb on + strand, within CCNA_00866at 945.269 kb on - strand, within CCNA_00866at 945.271 kb on + strand, within CCNA_00866at 945.273 kb on + strand, within CCNA_00866at 945.318 kb on + strand, within CCNA_00866at 945.324 kb on - strand, within CCNA_00866at 945.404 kb on - strand, within CCNA_00866at 945.481 kb on - strand, within CCNA_00866at 945.494 kb on + strand, within CCNA_00866at 945.494 kb on + strand, within CCNA_00866at 945.494 kb on + strand, within CCNA_00866at 945.495 kb on - strand, within CCNA_00866at 945.517 kb on - strand, within CCNA_00866at 945.543 kb on + strand, within CCNA_00866at 945.548 kb on + strand, within CCNA_00866at 945.555 kb on + strand, within CCNA_00866at 945.565 kb on + strand, within CCNA_00866at 945.573 kb on + strand, within CCNA_00866at 945.578 kb on - strand, within CCNA_00866at 945.583 kb on - strand, within CCNA_00866at 945.583 kb on - strand, within CCNA_00866at 945.584 kb on + strand, within CCNA_00866at 945.585 kb on + strand, within CCNA_00866at 945.621 kb on + strand, within CCNA_00866at 945.621 kb on + strand, within CCNA_00866at 945.621 kb on + strand, within CCNA_00866at 945.621 kb on + strand, within CCNA_00866at 945.621 kb on + strand, within CCNA_00866at 945.629 kb on - strand, within CCNA_00866at 945.629 kb on - strand, within CCNA_00866at 945.629 kb on - strand, within CCNA_00866at 945.629 kb on - strand, within CCNA_00866at 945.629 kb on - strandat 945.663 kb on - strand, within CCNA_00866at 945.668 kb on + strand, within CCNA_00866at 945.681 kb on - strand, within CCNA_00866at 945.682 kb on + strand, within CCNA_00866at 945.705 kb on + strandat 945.745 kb on - strandat 945.762 kb on + strandat 945.770 kb on - strandat 945.781 kb on - strandat 945.781 kb on - strandat 945.868 kb on - strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.921 kb on + strandat 945.924 kb on - strandat 945.929 kb on - strandat 945.929 kb on - strandat 945.929 kb on - strandat 945.929 kb on - strandat 945.929 kb on - strandat 945.929 kb on - strandat 945.929 kb on - strandat 945.929 kb on - strandat 946.011 kb on + strandat 946.065 kb on + strand, within CCNA_00867at 946.065 kb on - strand, within CCNA_00867at 946.065 kb on - strand, within CCNA_00867at 946.132 kb on + strand, within CCNA_00867at 946.135 kb on - strand, within CCNA_00867at 946.143 kb on + strand, within CCNA_00867at 946.143 kb on + strand, within CCNA_00867at 946.146 kb on + strand, within CCNA_00867at 946.151 kb on - strand, within CCNA_00867at 946.151 kb on - strand, within CCNA_00867at 946.151 kb on - strand, within CCNA_00867at 946.151 kb on - strand, within CCNA_00867at 946.161 kb on + strand, within CCNA_00867at 946.168 kb on - strand, within CCNA_00867at 946.190 kb on + strand, within CCNA_00867at 946.190 kb on + strand, within CCNA_00867at 946.198 kb on - strand, within CCNA_00867at 946.198 kb on - strand, within CCNA_00867at 946.237 kb on + strand, within CCNA_00867at 946.237 kb on + strand, within CCNA_00867at 946.245 kb on - strand, within CCNA_00867at 946.245 kb on - strand, within CCNA_00867at 946.245 kb on - strand, within CCNA_00867at 946.245 kb on - strand, within CCNA_00867at 946.245 kb on - strand, within CCNA_00867at 946.246 kb on - strand, within CCNA_00867at 946.304 kb on + strand, within CCNA_00867at 946.304 kb on + strand, within CCNA_00867at 946.304 kb on + strand, within CCNA_00867at 946.312 kb on - strand, within CCNA_00867at 946.312 kb on - strand, within CCNA_00867at 946.312 kb on - strand, within CCNA_00867at 946.312 kb on - strand, within CCNA_00867at 946.312 kb on - strand, within CCNA_00867at 946.324 kb on + strand, within CCNA_00867at 946.324 kb on + strand, within CCNA_00867at 946.324 kb on + strand, within CCNA_00867at 946.324 kb on + strand, within CCNA_00867at 946.332 kb on - strand, within CCNA_00867at 946.334 kb on + strand, within CCNA_00867at 946.340 kb on + strand, within CCNA_00867at 946.376 kb on + strand, within CCNA_00867at 946.381 kb on + strand, within CCNA_00867at 946.389 kb on - strand, within CCNA_00867at 946.405 kb on + strand, within CCNA_00867at 946.405 kb on + strand, within CCNA_00867at 946.413 kb on - strand, within CCNA_00867at 946.457 kb on + strandat 946.464 kb on + strandat 946.494 kb on - strandat 946.509 kb on + strandat 946.509 kb on + strandat 946.509 kb on + strandat 946.509 kb on + strandat 946.509 kb on + strandat 946.509 kb on + strandat 946.509 kb on + strandat 946.509 kb on + strandat 946.517 kb on - strandat 946.553 kb on - strandat 946.589 kb on + strandat 946.609 kb on - strandat 946.655 kb on + strandat 946.656 kb on + strandat 946.656 kb on + strandat 946.658 kb on - strandat 946.664 kb on - strandat 946.685 kb on + strandat 946.711 kb on - strandat 946.727 kb on - strandat 946.741 kb on + strandat 946.767 kb on - strandat 946.809 kb on + strand, within CCNA_03889at 946.815 kb on + strand, within CCNA_03889at 946.815 kb on + strand, within CCNA_03889at 946.815 kb on + strand, within CCNA_03889at 946.815 kb on + strand, within CCNA_03889at 946.815 kb on + strand, within CCNA_03889

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep1 12 days
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943,690 - CCNA_00865 0.33 -0.0
943,702 + CCNA_00865 0.34 -0.4
943,702 - CCNA_00865 0.34 +0.9
943,723 - CCNA_00865 0.36 -2.1
943,802 + CCNA_00865 0.41 +0.1
943,802 + CCNA_00865 0.41 -0.8
943,802 + CCNA_00865 0.41 -0.4
943,807 + CCNA_00865 0.42 -1.5
943,834 + CCNA_00865 0.43 +0.6
943,842 - CCNA_00865 0.44 -1.0
943,856 + CCNA_00865 0.45 -2.3
943,858 + CCNA_00865 0.45 -2.3
943,863 + CCNA_00865 0.45 -1.4
943,863 + CCNA_00865 0.45 +2.2
943,868 + CCNA_00865 0.46 +0.2
943,873 + CCNA_00865 0.46 -0.8
943,876 - CCNA_00865 0.46 -1.4
943,904 + CCNA_00865 0.48 -0.5
943,921 + CCNA_00865 0.49 -0.7
943,922 - CCNA_00865 0.50 -0.4
943,926 + CCNA_00865 0.50 -0.2
944,003 + CCNA_00865 0.55 -0.8
944,003 + CCNA_00865 0.55 -0.4
944,086 - CCNA_00865 0.61 -1.8
944,126 + CCNA_00865 0.64 -0.8
944,134 - CCNA_00865 0.64 +0.9
944,134 - CCNA_00865 0.64 -0.5
944,141 + CCNA_00865 0.65 -0.6
944,205 - CCNA_00865 0.69 -1.0
944,209 + CCNA_00865 0.70 -1.8
944,212 - CCNA_00865 0.70 -1.7
944,214 + CCNA_00865 0.70 +2.2
944,214 + CCNA_00865 0.70 +0.2
944,214 + CCNA_00865 0.70 +0.2
944,222 - CCNA_00865 0.70 +1.6
944,222 - CCNA_00865 0.70 -2.4
944,222 - CCNA_00865 0.70 +1.0
944,242 + CCNA_00865 0.72 -0.2
944,243 - CCNA_00865 0.72 -0.0
944,270 + CCNA_00865 0.74 -2.3
944,270 + CCNA_00865 0.74 -0.8
944,278 + CCNA_00865 0.74 +0.1
944,293 + CCNA_00865 0.75 -1.3
944,293 + CCNA_00865 0.75 +0.5
944,298 + CCNA_00865 0.76 -1.4
944,301 - CCNA_00865 0.76 -1.0
944,301 - CCNA_00865 0.76 -1.9
944,365 + CCNA_00865 0.80 -0.8
944,374 - -1.1
944,408 - CCNA_00865 0.83 +1.4
944,408 - CCNA_00865 0.83 -1.1
944,427 + CCNA_00865 0.85 +0.1
944,497 - CCNA_00865 0.90 -1.1
944,519 + +2.2
944,527 - -0.6
944,536 + -0.4
944,558 + +1.8
944,574 + +0.9
944,574 + -1.3
944,636 - -0.5
944,669 - +0.5
944,698 + -2.3
944,701 - +0.5
944,706 - +1.2
944,730 - -1.6
944,816 - CCNA_00866 0.13 +1.1
944,818 + CCNA_00866 0.13 -0.5
944,842 - CCNA_00866 0.15 +2.2
944,901 + CCNA_00866 0.21 +1.5
944,901 + CCNA_00866 0.21 -0.8
944,901 + CCNA_00866 0.21 -1.6
944,901 + CCNA_00866 0.21 +0.1
944,901 + CCNA_00866 0.21 +0.2
944,909 - CCNA_00866 0.21 +1.3
944,909 - CCNA_00866 0.21 +1.6
944,909 - CCNA_00866 0.21 -0.1
944,909 - CCNA_00866 0.21 +0.6
944,909 - CCNA_00866 0.21 -0.1
944,942 - CCNA_00866 0.24 +0.6
944,957 - CCNA_00866 0.25 +0.5
944,968 + CCNA_00866 0.26 +0.4
944,981 - +1.2
945,086 - CCNA_00866 0.37 +0.2
945,089 - CCNA_00866 0.37 +0.2
945,101 + CCNA_00866 0.38 -0.5
945,109 - CCNA_00866 0.39 -0.4
945,136 + CCNA_00866 0.41 -1.1
945,144 - CCNA_00866 0.42 -0.1
945,149 + CCNA_00866 0.42 +0.2
945,167 + CCNA_00866 0.44 +2.2
945,167 + CCNA_00866 0.44 -0.6
945,167 + CCNA_00866 0.44 -1.9
945,172 + CCNA_00866 0.44 +0.3
945,175 - CCNA_00866 0.44 -2.1
945,175 - CCNA_00866 0.44 +0.8
945,175 - CCNA_00866 0.44 -2.2
945,175 - CCNA_00866 0.44 -0.4
945,191 + CCNA_00866 0.46 +1.5
945,237 + CCNA_00866 0.50 +0.3
945,269 - CCNA_00866 0.52 +1.4
945,271 + CCNA_00866 0.53 +1.1
945,273 + CCNA_00866 0.53 +1.2
945,318 + CCNA_00866 0.57 -1.0
945,324 - CCNA_00866 0.57 -0.6
945,404 - CCNA_00866 0.64 -0.6
945,481 - CCNA_00866 0.71 +0.5
945,494 + CCNA_00866 0.72 -1.1
945,494 + CCNA_00866 0.72 -0.1
945,494 + CCNA_00866 0.72 -1.0
945,495 - CCNA_00866 0.72 +0.0
945,517 - CCNA_00866 0.74 -2.6
945,543 + CCNA_00866 0.76 -0.1
945,548 + CCNA_00866 0.77 -0.1
945,555 + CCNA_00866 0.77 -0.4
945,565 + CCNA_00866 0.78 +0.3
945,573 + CCNA_00866 0.79 -0.4
945,578 - CCNA_00866 0.79 -0.1
945,583 - CCNA_00866 0.80 -0.8
945,583 - CCNA_00866 0.80 +0.9
945,584 + CCNA_00866 0.80 -0.3
945,585 + CCNA_00866 0.80 +0.8
945,621 + CCNA_00866 0.83 -1.4
945,621 + CCNA_00866 0.83 -2.0
945,621 + CCNA_00866 0.83 +1.2
945,621 + CCNA_00866 0.83 +1.2
945,621 + CCNA_00866 0.83 +0.4
945,629 - CCNA_00866 0.84 +0.5
945,629 - CCNA_00866 0.84 -0.1
945,629 - CCNA_00866 0.84 -0.5
945,629 - CCNA_00866 0.84 -1.6
945,629 - +1.6
945,663 - CCNA_00866 0.87 -2.4
945,668 + CCNA_00866 0.87 -1.3
945,681 - CCNA_00866 0.88 -1.4
945,682 + CCNA_00866 0.88 -0.1
945,705 + +2.2
945,745 - +0.2
945,762 + +0.1
945,770 - -2.1
945,781 - -4.2
945,781 - -0.1
945,868 - -0.4
945,921 + -3.0
945,921 + -1.1
945,921 + +2.2
945,921 + +0.2
945,921 + -0.6
945,921 + +1.9
945,921 + -0.1
945,921 + -2.1
945,921 + -2.4
945,921 + +0.2
945,921 + +2.0
945,921 + -0.7
945,924 - +0.6
945,929 - -2.3
945,929 - -1.9
945,929 - -0.2
945,929 - +0.2
945,929 - +0.5
945,929 - -0.4
945,929 - +0.0
945,929 - +0.1
946,011 + +0.9
946,065 + CCNA_00867 0.12 -1.2
946,065 - CCNA_00867 0.12 -0.2
946,065 - CCNA_00867 0.12 +1.0
946,132 + CCNA_00867 0.26 +0.1
946,135 - CCNA_00867 0.27 -1.0
946,143 + CCNA_00867 0.28 -1.3
946,143 + CCNA_00867 0.28 +0.9
946,146 + CCNA_00867 0.29 +0.2
946,151 - CCNA_00867 0.30 -1.3
946,151 - CCNA_00867 0.30 -1.7
946,151 - CCNA_00867 0.30 +1.0
946,151 - CCNA_00867 0.30 -1.1
946,161 + CCNA_00867 0.32 -2.4
946,168 - CCNA_00867 0.34 -2.4
946,190 + CCNA_00867 0.38 -0.3
946,190 + CCNA_00867 0.38 +0.9
946,198 - CCNA_00867 0.40 -0.6
946,198 - CCNA_00867 0.40 -0.4
946,237 + CCNA_00867 0.48 +0.7
946,237 + CCNA_00867 0.48 +0.5
946,245 - CCNA_00867 0.49 -0.3
946,245 - CCNA_00867 0.49 +1.6
946,245 - CCNA_00867 0.49 -1.0
946,245 - CCNA_00867 0.49 +0.1
946,245 - CCNA_00867 0.49 -0.3
946,246 - CCNA_00867 0.49 +0.1
946,304 + CCNA_00867 0.61 -0.9
946,304 + CCNA_00867 0.61 -0.5
946,304 + CCNA_00867 0.61 +0.4
946,312 - CCNA_00867 0.63 -1.6
946,312 - CCNA_00867 0.63 +0.3
946,312 - CCNA_00867 0.63 +2.1
946,312 - CCNA_00867 0.63 -0.6
946,312 - CCNA_00867 0.63 -0.6
946,324 + CCNA_00867 0.65 -0.7
946,324 + CCNA_00867 0.65 +1.1
946,324 + CCNA_00867 0.65 +0.2
946,324 + CCNA_00867 0.65 -0.8
946,332 - CCNA_00867 0.67 -1.5
946,334 + CCNA_00867 0.67 +0.1
946,340 + CCNA_00867 0.69 +0.1
946,376 + CCNA_00867 0.76 -1.0
946,381 + CCNA_00867 0.77 -0.1
946,389 - CCNA_00867 0.79 +1.3
946,405 + CCNA_00867 0.82 -0.4
946,405 + CCNA_00867 0.82 -0.3
946,413 - CCNA_00867 0.84 +1.3
946,457 + +0.4
946,464 + +0.7
946,494 - -0.7
946,509 + -0.1
946,509 + -0.1
946,509 + +0.5
946,509 + +0.3
946,509 + +0.6
946,509 + +0.6
946,509 + +0.2
946,509 + +1.2
946,517 - -1.5
946,553 - +0.3
946,589 + +1.1
946,609 - -0.6
946,655 + -0.4
946,656 + +0.6
946,656 + +0.4
946,658 - +1.4
946,664 - +1.4
946,685 + +0.7
946,711 - -1.2
946,727 - +2.0
946,741 + -1.0
946,767 - +1.4
946,809 + CCNA_03889 0.12 -0.5
946,815 + CCNA_03889 0.13 +0.1
946,815 + CCNA_03889 0.13 +0.1
946,815 + CCNA_03889 0.13 -0.1
946,815 + CCNA_03889 0.13 +0.1
946,815 + CCNA_03889 0.13 -2.0

Or see this region's nucleotide sequence