Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00808

Experiment: PYE_noCalcium 25C survival rep1 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00806 and CCNA_00807 are separated by 7 nucleotidesCCNA_00807 and CCNA_00808 are separated by 93 nucleotidesCCNA_00808 and CCNA_00809 are separated by 279 nucleotides CCNA_00806: CCNA_00806 - inner membrane protein translocase component yidC, at 869,778 to 871,625 _00806 CCNA_00807: CCNA_00807 - ribonuclease P protein component, at 871,633 to 872,082 _00807 CCNA_00808: CCNA_00808 - LSU ribosomal protein L34P, at 872,176 to 872,310 _00808 CCNA_00809: CCNA_00809 - quinone oxidoreductase, at 872,590 to 873,585 _00809 Position (kb) 872 873Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 871.683 kb on - strand, within CCNA_00807at 871.762 kb on - strand, within CCNA_00807at 871.762 kb on - strand, within CCNA_00807at 872.398 kb on + strandat 872.417 kb on + strandat 872.424 kb on - strandat 872.424 kb on - strandat 872.425 kb on - strandat 872.425 kb on - strandat 872.425 kb on - strandat 872.425 kb on - strandat 872.425 kb on - strandat 872.425 kb on - strandat 872.435 kb on + strandat 872.435 kb on + strandat 872.443 kb on - strandat 872.473 kb on + strandat 872.478 kb on + strandat 872.502 kb on + strandat 872.526 kb on - strandat 872.567 kb on + strandat 872.614 kb on - strandat 872.614 kb on - strandat 872.618 kb on + strandat 872.619 kb on - strandat 872.619 kb on - strandat 872.624 kb on - strandat 872.626 kb on - strandat 872.637 kb on + strandat 872.644 kb on + strandat 872.659 kb on + strandat 872.673 kb on - strandat 872.673 kb on - strandat 872.675 kb on + strandat 872.675 kb on + strandat 872.675 kb on + strandat 872.683 kb on - strandat 872.798 kb on + strand, within CCNA_00809at 872.798 kb on - strand, within CCNA_00809at 872.806 kb on - strand, within CCNA_00809at 872.806 kb on - strand, within CCNA_00809at 872.806 kb on - strand, within CCNA_00809at 872.806 kb on - strand, within CCNA_00809at 872.806 kb on - strand, within CCNA_00809at 872.818 kb on - strand, within CCNA_00809at 872.821 kb on - strand, within CCNA_00809at 872.838 kb on + strand, within CCNA_00809at 872.838 kb on + strand, within CCNA_00809at 872.880 kb on - strand, within CCNA_00809at 872.923 kb on + strand, within CCNA_00809at 872.960 kb on + strand, within CCNA_00809at 872.960 kb on + strand, within CCNA_00809at 872.960 kb on + strand, within CCNA_00809at 872.960 kb on + strand, within CCNA_00809at 872.960 kb on + strand, within CCNA_00809at 872.968 kb on - strand, within CCNA_00809at 872.968 kb on - strand, within CCNA_00809at 872.968 kb on - strand, within CCNA_00809at 872.968 kb on - strand, within CCNA_00809at 872.983 kb on + strand, within CCNA_00809at 872.990 kb on + strand, within CCNA_00809at 873.020 kb on + strand, within CCNA_00809at 873.020 kb on + strand, within CCNA_00809at 873.020 kb on + strand, within CCNA_00809at 873.020 kb on + strand, within CCNA_00809at 873.020 kb on + strand, within CCNA_00809at 873.028 kb on - strand, within CCNA_00809at 873.028 kb on - strand, within CCNA_00809at 873.028 kb on - strand, within CCNA_00809at 873.028 kb on - strand, within CCNA_00809at 873.028 kb on - strand, within CCNA_00809at 873.028 kb on - strand, within CCNA_00809at 873.028 kb on - strand, within CCNA_00809at 873.028 kb on - strand, within CCNA_00809at 873.028 kb on - strand, within CCNA_00809at 873.028 kb on - strand, within CCNA_00809at 873.080 kb on + strand, within CCNA_00809at 873.082 kb on - strand, within CCNA_00809at 873.088 kb on - strand, within CCNA_00809at 873.088 kb on - strand, within CCNA_00809at 873.091 kb on + strand, within CCNA_00809at 873.093 kb on - strand, within CCNA_00809at 873.100 kb on + strand, within CCNA_00809at 873.100 kb on + strand, within CCNA_00809at 873.135 kb on - strand, within CCNA_00809at 873.138 kb on - strand, within CCNA_00809at 873.178 kb on + strand, within CCNA_00809at 873.182 kb on - strand, within CCNA_00809at 873.221 kb on + strand, within CCNA_00809at 873.257 kb on + strand, within CCNA_00809at 873.292 kb on - strand, within CCNA_00809

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep1 12 days
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871,683 - CCNA_00807 0.11 -0.8
871,762 - CCNA_00807 0.29 -0.2
871,762 - CCNA_00807 0.29 -2.0
872,398 + -1.5
872,417 + -2.2
872,424 - -0.5
872,424 - -1.4
872,425 - +1.1
872,425 - -0.4
872,425 - +0.5
872,425 - -0.8
872,425 - -1.5
872,425 - +0.6
872,435 + +1.6
872,435 + -2.1
872,443 - +1.2
872,473 + +1.2
872,478 + +2.2
872,502 + -1.8
872,526 - -0.6
872,567 + +0.2
872,614 - +0.4
872,614 - +0.1
872,618 + +0.6
872,619 - -0.0
872,619 - -1.0
872,624 - -1.0
872,626 - +0.1
872,637 + -0.7
872,644 + -1.8
872,659 + -0.4
872,673 - -0.3
872,673 - -0.8
872,675 + -0.4
872,675 + -2.0
872,675 + +2.2
872,683 - -0.3
872,798 + CCNA_00809 0.21 -1.1
872,798 - CCNA_00809 0.21 +0.2
872,806 - CCNA_00809 0.22 -0.3
872,806 - CCNA_00809 0.22 +0.6
872,806 - CCNA_00809 0.22 -1.3
872,806 - CCNA_00809 0.22 -1.3
872,806 - CCNA_00809 0.22 -0.2
872,818 - CCNA_00809 0.23 -0.6
872,821 - CCNA_00809 0.23 +0.9
872,838 + CCNA_00809 0.25 +2.8
872,838 + CCNA_00809 0.25 -0.2
872,880 - CCNA_00809 0.29 -1.0
872,923 + CCNA_00809 0.33 -1.7
872,960 + CCNA_00809 0.37 -1.4
872,960 + CCNA_00809 0.37 +0.7
872,960 + CCNA_00809 0.37 -0.1
872,960 + CCNA_00809 0.37 -1.9
872,960 + CCNA_00809 0.37 -1.1
872,968 - CCNA_00809 0.38 +0.3
872,968 - CCNA_00809 0.38 -0.3
872,968 - CCNA_00809 0.38 -0.2
872,968 - CCNA_00809 0.38 -0.1
872,983 + CCNA_00809 0.39 +0.3
872,990 + CCNA_00809 0.40 -0.4
873,020 + CCNA_00809 0.43 -0.5
873,020 + CCNA_00809 0.43 -0.5
873,020 + CCNA_00809 0.43 -0.2
873,020 + CCNA_00809 0.43 +0.5
873,020 + CCNA_00809 0.43 -1.8
873,028 - CCNA_00809 0.44 +0.0
873,028 - CCNA_00809 0.44 +0.2
873,028 - CCNA_00809 0.44 +0.2
873,028 - CCNA_00809 0.44 +0.9
873,028 - CCNA_00809 0.44 +0.8
873,028 - CCNA_00809 0.44 +0.8
873,028 - CCNA_00809 0.44 +0.4
873,028 - CCNA_00809 0.44 +0.5
873,028 - CCNA_00809 0.44 +0.8
873,028 - CCNA_00809 0.44 -0.0
873,080 + CCNA_00809 0.49 -0.3
873,082 - CCNA_00809 0.49 +1.2
873,088 - CCNA_00809 0.50 +1.2
873,088 - CCNA_00809 0.50 -0.0
873,091 + CCNA_00809 0.50 -1.7
873,093 - CCNA_00809 0.51 -0.2
873,100 + CCNA_00809 0.51 -3.4
873,100 + CCNA_00809 0.51 -0.1
873,135 - CCNA_00809 0.55 -1.1
873,138 - CCNA_00809 0.55 -0.1
873,178 + CCNA_00809 0.59 -0.1
873,182 - CCNA_00809 0.59 +0.2
873,221 + CCNA_00809 0.63 -1.1
873,257 + CCNA_00809 0.67 +0.6
873,292 - CCNA_00809 0.70 +0.7

Or see this region's nucleotide sequence