Experiment: PYE_noCalcium 25C survival rep1 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00633 and CCNA_00634 overlap by 4 nucleotides CCNA_00634 and CCNA_00635 are separated by 761 nucleotides
CCNA_00633: CCNA_00633 - receiver domain-glutamate methylesterase CheBII, at 679,391 to 680,467
_00633
CCNA_00634: CCNA_00634 - chemotaxis protein methyltransferase, at 680,464 to 681,294
_00634
CCNA_00635: CCNA_00635 - CHASE2 membrane receptor, at 682,056 to 683,531
_00635
Position (kb) 680
681
682 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 679.479 kb on + strand at 679.479 kb on + strand at 679.479 kb on + strand at 679.479 kb on + strand at 679.487 kb on - strand at 679.487 kb on - strand at 679.487 kb on - strand at 679.501 kb on - strand, within CCNA_00633 at 679.537 kb on + strand, within CCNA_00633 at 679.550 kb on - strand, within CCNA_00633 at 679.554 kb on - strand, within CCNA_00633 at 679.569 kb on + strand, within CCNA_00633 at 679.579 kb on - strand, within CCNA_00633 at 679.615 kb on + strand, within CCNA_00633 at 679.615 kb on + strand, within CCNA_00633 at 679.623 kb on - strand, within CCNA_00633 at 679.623 kb on - strand, within CCNA_00633 at 679.623 kb on - strand, within CCNA_00633 at 679.623 kb on - strand, within CCNA_00633 at 679.657 kb on + strand, within CCNA_00633 at 679.667 kb on - strand, within CCNA_00633 at 679.677 kb on - strand, within CCNA_00633 at 679.681 kb on + strand, within CCNA_00633 at 679.743 kb on - strand, within CCNA_00633 at 679.758 kb on + strand, within CCNA_00633 at 679.758 kb on + strand, within CCNA_00633 at 679.758 kb on - strand, within CCNA_00633 at 679.763 kb on + strand, within CCNA_00633 at 679.766 kb on - strand, within CCNA_00633 at 679.776 kb on - strand, within CCNA_00633 at 679.781 kb on - strand, within CCNA_00633 at 679.783 kb on + strand, within CCNA_00633 at 679.831 kb on + strand, within CCNA_00633 at 679.831 kb on + strand, within CCNA_00633 at 679.831 kb on + strand, within CCNA_00633 at 679.831 kb on + strand, within CCNA_00633 at 679.831 kb on + strand, within CCNA_00633 at 679.831 kb on + strand, within CCNA_00633 at 679.839 kb on - strand, within CCNA_00633 at 679.839 kb on - strand, within CCNA_00633 at 679.854 kb on + strand, within CCNA_00633 at 679.858 kb on + strand, within CCNA_00633 at 679.878 kb on + strand, within CCNA_00633 at 679.888 kb on + strand, within CCNA_00633 at 679.896 kb on - strand at 679.896 kb on - strand, within CCNA_00633 at 679.909 kb on - strand, within CCNA_00633 at 679.920 kb on - strand, within CCNA_00633 at 679.923 kb on + strand, within CCNA_00633 at 679.972 kb on - strand, within CCNA_00633 at 679.982 kb on - strand, within CCNA_00633 at 679.982 kb on - strand, within CCNA_00633 at 679.988 kb on + strand, within CCNA_00633 at 679.996 kb on - strand, within CCNA_00633 at 680.007 kb on + strand, within CCNA_00633 at 680.019 kb on + strand, within CCNA_00633 at 680.023 kb on + strand, within CCNA_00633 at 680.038 kb on + strand, within CCNA_00633 at 680.066 kb on + strand, within CCNA_00633 at 680.066 kb on + strand, within CCNA_00633 at 680.074 kb on - strand, within CCNA_00633 at 680.074 kb on - strand, within CCNA_00633 at 680.074 kb on - strand, within CCNA_00633 at 680.098 kb on + strand, within CCNA_00633 at 680.098 kb on + strand, within CCNA_00633 at 680.122 kb on + strand, within CCNA_00633 at 680.130 kb on - strand, within CCNA_00633 at 680.130 kb on - strand, within CCNA_00633 at 680.200 kb on + strand, within CCNA_00633 at 680.206 kb on + strand, within CCNA_00633 at 680.208 kb on - strand, within CCNA_00633 at 680.216 kb on + strand, within CCNA_00633 at 680.216 kb on + strand, within CCNA_00633 at 680.224 kb on - strand, within CCNA_00633 at 680.224 kb on - strand, within CCNA_00633 at 680.224 kb on - strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.236 kb on + strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.244 kb on - strand, within CCNA_00633 at 680.255 kb on - strand, within CCNA_00633 at 680.262 kb on - strand, within CCNA_00633 at 680.281 kb on - strand, within CCNA_00633 at 680.282 kb on - strand, within CCNA_00633 at 680.325 kb on - strand, within CCNA_00633 at 680.326 kb on + strand, within CCNA_00633 at 680.336 kb on + strand, within CCNA_00633 at 680.341 kb on + strand, within CCNA_00633 at 680.345 kb on - strand, within CCNA_00633 at 680.360 kb on + strand at 680.371 kb on + strand at 680.428 kb on - strand at 680.431 kb on + strand at 680.436 kb on + strand at 680.440 kb on + strand at 680.449 kb on + strand at 680.450 kb on + strand at 680.478 kb on - strand at 680.505 kb on - strand at 680.513 kb on + strand at 680.519 kb on - strand at 680.532 kb on + strand at 680.541 kb on - strand at 680.541 kb on - strand at 680.547 kb on + strand, within CCNA_00634 at 680.555 kb on - strand, within CCNA_00634 at 680.555 kb on - strand, within CCNA_00634 at 680.625 kb on - strand, within CCNA_00634 at 680.651 kb on - strand, within CCNA_00634 at 680.682 kb on - strand, within CCNA_00634 at 680.708 kb on + strand, within CCNA_00634 at 680.716 kb on - strand, within CCNA_00634 at 680.723 kb on - strand, within CCNA_00634 at 680.735 kb on - strand, within CCNA_00634 at 680.738 kb on - strand, within CCNA_00634 at 680.789 kb on - strand, within CCNA_00634 at 680.799 kb on + strand, within CCNA_00634 at 680.799 kb on - strand, within CCNA_00634 at 680.807 kb on - strand, within CCNA_00634 at 680.808 kb on - strand, within CCNA_00634 at 680.808 kb on - strand, within CCNA_00634 at 680.812 kb on - strand, within CCNA_00634 at 680.817 kb on + strand, within CCNA_00634 at 680.825 kb on - strand, within CCNA_00634 at 680.838 kb on + strand, within CCNA_00634 at 680.838 kb on + strand, within CCNA_00634 at 680.838 kb on + strand, within CCNA_00634 at 680.838 kb on + strand, within CCNA_00634 at 680.846 kb on - strand, within CCNA_00634 at 680.846 kb on - strand, within CCNA_00634 at 680.846 kb on - strand, within CCNA_00634 at 680.846 kb on - strand, within CCNA_00634 at 680.846 kb on - strand, within CCNA_00634 at 680.846 kb on - strand, within CCNA_00634 at 680.900 kb on + strand, within CCNA_00634 at 680.903 kb on - strand, within CCNA_00634 at 681.034 kb on - strand, within CCNA_00634 at 681.042 kb on - strand, within CCNA_00634 at 681.042 kb on - strand, within CCNA_00634 at 681.054 kb on + strand, within CCNA_00634 at 681.054 kb on + strand, within CCNA_00634 at 681.062 kb on - strand, within CCNA_00634 at 681.062 kb on - strand, within CCNA_00634 at 681.062 kb on - strand, within CCNA_00634 at 681.062 kb on - strand, within CCNA_00634 at 681.062 kb on - strand, within CCNA_00634 at 681.062 kb on - strand, within CCNA_00634 at 681.062 kb on - strand, within CCNA_00634 at 681.063 kb on - strand, within CCNA_00634 at 681.165 kb on - strand, within CCNA_00634 at 681.188 kb on - strand, within CCNA_00634 at 681.264 kb on - strand at 681.264 kb on - strand at 681.269 kb on - strand at 681.283 kb on + strand at 681.283 kb on + strand at 681.283 kb on + strand at 681.283 kb on + strand at 681.283 kb on + strand at 681.291 kb on - strand at 681.291 kb on - strand at 681.291 kb on - strand at 681.291 kb on - strand at 681.318 kb on - strand at 681.322 kb on + strand at 681.322 kb on + strand at 681.322 kb on + strand at 681.322 kb on + strand at 681.322 kb on + strand at 681.322 kb on + strand at 681.322 kb on + strand at 681.322 kb on + strand at 681.322 kb on + strand at 681.330 kb on - strand at 681.330 kb on - strand at 681.330 kb on - strand at 681.389 kb on + strand at 681.397 kb on - strand at 681.397 kb on - strand at 681.457 kb on - strand at 681.477 kb on - strand at 681.502 kb on + strand at 681.502 kb on + strand at 681.502 kb on + strand at 681.510 kb on - strand at 681.538 kb on + strand at 681.552 kb on + strand at 681.562 kb on + strand at 681.573 kb on - strand at 681.581 kb on + strand at 681.586 kb on - strand at 681.611 kb on + strand at 681.635 kb on + strand at 681.659 kb on - strand at 681.727 kb on - strand at 681.808 kb on + strand at 681.808 kb on + strand at 681.816 kb on - strand at 681.859 kb on - strand at 681.866 kb on - strand at 681.935 kb on - strand at 681.943 kb on + strand at 681.943 kb on + strand at 681.943 kb on + strand at 681.943 kb on + strand at 681.943 kb on + strand at 681.943 kb on + strand at 681.951 kb on - strand at 681.951 kb on - strand at 681.951 kb on - strand at 681.951 kb on - strand at 681.951 kb on - strand at 681.987 kb on + strand at 682.022 kb on + strand at 682.028 kb on + strand at 682.030 kb on - strand at 682.044 kb on + strand at 682.117 kb on + strand at 682.142 kb on + strand at 682.142 kb on + strand at 682.155 kb on - strand at 682.227 kb on - strand, within CCNA_00635 at 682.227 kb on - strand, within CCNA_00635 at 682.236 kb on + strand, within CCNA_00635 at 682.237 kb on + strand, within CCNA_00635 at 682.237 kb on + strand, within CCNA_00635 at 682.271 kb on - strand, within CCNA_00635 at 682.275 kb on + strand, within CCNA_00635 at 682.279 kb on + strand, within CCNA_00635 at 682.283 kb on - strand, within CCNA_00635
Per-strain Table
Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep1 12 days remove 679,479 + -1.2 679,479 + -0.5 679,479 + -0.7 679,479 + -0.2 679,487 - +0.7 679,487 - +0.5 679,487 - -0.4 679,501 - CCNA_00633 0.10 +4.1 679,537 + CCNA_00633 0.14 -1.9 679,550 - CCNA_00633 0.15 -0.7 679,554 - CCNA_00633 0.15 -0.3 679,569 + CCNA_00633 0.17 -0.9 679,579 - CCNA_00633 0.17 -0.9 679,615 + CCNA_00633 0.21 +2.0 679,615 + CCNA_00633 0.21 -0.7 679,623 - CCNA_00633 0.22 -1.3 679,623 - CCNA_00633 0.22 -0.5 679,623 - CCNA_00633 0.22 -1.4 679,623 - CCNA_00633 0.22 +1.3 679,657 + CCNA_00633 0.25 -0.8 679,667 - CCNA_00633 0.26 +1.1 679,677 - CCNA_00633 0.27 -0.6 679,681 + CCNA_00633 0.27 -0.4 679,743 - CCNA_00633 0.33 +0.2 679,758 + CCNA_00633 0.34 -0.4 679,758 + CCNA_00633 0.34 +0.2 679,758 - CCNA_00633 0.34 -0.0 679,763 + CCNA_00633 0.35 +0.3 679,766 - CCNA_00633 0.35 -1.9 679,776 - CCNA_00633 0.36 +0.7 679,781 - CCNA_00633 0.36 +2.4 679,783 + CCNA_00633 0.36 -0.9 679,831 + CCNA_00633 0.41 +0.2 679,831 + CCNA_00633 0.41 -0.5 679,831 + CCNA_00633 0.41 -0.0 679,831 + CCNA_00633 0.41 +1.3 679,831 + CCNA_00633 0.41 +0.3 679,831 + CCNA_00633 0.41 +0.2 679,839 - CCNA_00633 0.42 -1.9 679,839 - CCNA_00633 0.42 +0.3 679,854 + CCNA_00633 0.43 -0.7 679,858 + CCNA_00633 0.43 -1.4 679,878 + CCNA_00633 0.45 -1.0 679,888 + CCNA_00633 0.46 -1.6 679,896 - +0.7 679,896 - CCNA_00633 0.47 -0.4 679,909 - CCNA_00633 0.48 +1.9 679,920 - CCNA_00633 0.49 -1.4 679,923 + CCNA_00633 0.49 -1.6 679,972 - CCNA_00633 0.54 -0.4 679,982 - CCNA_00633 0.55 +0.1 679,982 - CCNA_00633 0.55 -1.6 679,988 + CCNA_00633 0.55 +1.7 679,996 - CCNA_00633 0.56 -0.7 680,007 + CCNA_00633 0.57 +0.7 680,019 + CCNA_00633 0.58 -1.4 680,023 + CCNA_00633 0.59 +2.3 680,038 + CCNA_00633 0.60 +1.3 680,066 + CCNA_00633 0.63 -1.3 680,066 + CCNA_00633 0.63 -1.5 680,074 - CCNA_00633 0.63 +0.1 680,074 - CCNA_00633 0.63 -0.9 680,074 - CCNA_00633 0.63 +1.3 680,098 + CCNA_00633 0.66 -0.4 680,098 + CCNA_00633 0.66 +0.4 680,122 + CCNA_00633 0.68 +0.1 680,130 - CCNA_00633 0.69 +0.3 680,130 - CCNA_00633 0.69 -0.1 680,200 + CCNA_00633 0.75 -0.0 680,206 + CCNA_00633 0.76 +1.4 680,208 - CCNA_00633 0.76 -1.9 680,216 + CCNA_00633 0.77 -1.9 680,216 + CCNA_00633 0.77 -0.5 680,224 - CCNA_00633 0.77 -0.0 680,224 - CCNA_00633 0.77 -0.1 680,224 - CCNA_00633 0.77 -0.3 680,236 + CCNA_00633 0.78 -0.4 680,236 + CCNA_00633 0.78 -2.0 680,236 + CCNA_00633 0.78 -0.4 680,236 + CCNA_00633 0.78 -0.4 680,236 + CCNA_00633 0.78 +1.0 680,236 + CCNA_00633 0.78 -0.9 680,236 + CCNA_00633 0.78 -1.8 680,236 + CCNA_00633 0.78 -0.7 680,236 + CCNA_00633 0.78 -0.6 680,236 + CCNA_00633 0.78 +0.3 680,236 + CCNA_00633 0.78 +0.7 680,244 - CCNA_00633 0.79 -1.4 680,244 - CCNA_00633 0.79 -0.0 680,244 - CCNA_00633 0.79 +0.7 680,244 - CCNA_00633 0.79 +0.3 680,244 - CCNA_00633 0.79 -1.3 680,244 - CCNA_00633 0.79 +0.7 680,244 - CCNA_00633 0.79 -0.3 680,244 - CCNA_00633 0.79 -1.5 680,244 - CCNA_00633 0.79 -0.7 680,244 - CCNA_00633 0.79 -0.3 680,255 - CCNA_00633 0.80 -2.0 680,262 - CCNA_00633 0.81 +0.3 680,281 - CCNA_00633 0.83 +1.3 680,282 - CCNA_00633 0.83 -0.3 680,325 - CCNA_00633 0.87 -1.7 680,326 + CCNA_00633 0.87 +0.7 680,336 + CCNA_00633 0.88 -0.7 680,341 + CCNA_00633 0.88 -1.8 680,345 - CCNA_00633 0.89 -1.3 680,360 + +1.3 680,371 + +0.7 680,428 - -0.7 680,431 + -0.4 680,436 + -1.0 680,440 + +1.3 680,449 + -1.7 680,450 + +1.5 680,478 - -0.5 680,505 - -1.0 680,513 + -1.3 680,519 - -0.3 680,532 + -0.9 680,541 - +0.7 680,541 - -0.0 680,547 + CCNA_00634 0.10 -1.2 680,555 - CCNA_00634 0.11 +0.7 680,555 - CCNA_00634 0.11 +3.3 680,625 - CCNA_00634 0.19 -0.3 680,651 - CCNA_00634 0.23 +0.3 680,682 - CCNA_00634 0.26 +0.1 680,708 + CCNA_00634 0.29 -0.3 680,716 - CCNA_00634 0.30 -1.4 680,723 - CCNA_00634 0.31 -1.4 680,735 - CCNA_00634 0.33 +1.7 680,738 - CCNA_00634 0.33 -0.0 680,789 - CCNA_00634 0.39 -0.1 680,799 + CCNA_00634 0.40 -0.3 680,799 - CCNA_00634 0.40 -0.0 680,807 - CCNA_00634 0.41 -2.1 680,808 - CCNA_00634 0.41 -1.7 680,808 - CCNA_00634 0.41 -0.4 680,812 - CCNA_00634 0.42 +0.2 680,817 + CCNA_00634 0.42 +1.3 680,825 - CCNA_00634 0.43 -2.1 680,838 + CCNA_00634 0.45 +1.3 680,838 + CCNA_00634 0.45 +0.3 680,838 + CCNA_00634 0.45 +0.3 680,838 + CCNA_00634 0.45 +2.3 680,846 - CCNA_00634 0.46 -1.6 680,846 - CCNA_00634 0.46 -0.3 680,846 - CCNA_00634 0.46 -1.8 680,846 - CCNA_00634 0.46 +1.0 680,846 - CCNA_00634 0.46 +1.0 680,846 - CCNA_00634 0.46 +0.2 680,900 + CCNA_00634 0.52 -2.1 680,903 - CCNA_00634 0.53 -0.3 681,034 - CCNA_00634 0.69 +0.5 681,042 - CCNA_00634 0.70 -0.9 681,042 - CCNA_00634 0.70 -0.9 681,054 + CCNA_00634 0.71 +0.7 681,054 + CCNA_00634 0.71 -0.1 681,062 - CCNA_00634 0.72 +0.5 681,062 - CCNA_00634 0.72 -0.9 681,062 - CCNA_00634 0.72 -1.2 681,062 - CCNA_00634 0.72 +2.3 681,062 - CCNA_00634 0.72 +1.3 681,062 - CCNA_00634 0.72 -2.8 681,062 - CCNA_00634 0.72 -1.0 681,063 - CCNA_00634 0.72 -1.2 681,165 - CCNA_00634 0.84 +0.7 681,188 - CCNA_00634 0.87 +2.3 681,264 - +2.3 681,264 - +1.3 681,269 - +2.3 681,283 + +0.7 681,283 + +1.3 681,283 + +1.3 681,283 + -1.2 681,283 + +2.3 681,291 - +1.8 681,291 - +1.3 681,291 - -0.0 681,291 - +1.3 681,318 - -1.2 681,322 + -0.0 681,322 + +1.3 681,322 + +1.3 681,322 + -0.0 681,322 + +2.3 681,322 + +0.3 681,322 + +1.3 681,322 + -0.0 681,322 + -2.2 681,330 - +2.3 681,330 - +0.3 681,330 - +1.3 681,389 + -2.0 681,397 - +2.3 681,397 - +0.1 681,457 - -1.0 681,477 - +1.3 681,502 + +0.3 681,502 + -0.5 681,502 + -0.7 681,510 - +1.3 681,538 + -1.4 681,552 + +2.3 681,562 + -1.0 681,573 - +1.3 681,581 + +0.5 681,586 - +2.3 681,611 + +1.1 681,635 + +2.3 681,659 - +0.4 681,727 - +0.7 681,808 + +2.3 681,808 + -0.3 681,816 - -1.7 681,859 - +3.3 681,866 - +1.0 681,935 - -0.0 681,943 + +3.3 681,943 + -0.9 681,943 + +0.3 681,943 + -1.2 681,943 + -0.4 681,943 + +0.3 681,951 - +1.3 681,951 - -2.2 681,951 - -0.0 681,951 - +2.3 681,951 - +0.7 681,987 + -0.3 682,022 + -0.7 682,028 + +1.7 682,030 - -0.7 682,044 + -0.4 682,117 + -0.9 682,142 + +1.4 682,142 + +1.0 682,155 - -1.3 682,227 - CCNA_00635 0.12 -0.3 682,227 - CCNA_00635 0.12 -0.7 682,236 + CCNA_00635 0.12 +4.3 682,237 + CCNA_00635 0.12 -0.3 682,237 + CCNA_00635 0.12 +0.6 682,271 - CCNA_00635 0.15 -0.3 682,275 + CCNA_00635 0.15 +0.2 682,279 + CCNA_00635 0.15 +0.5 682,283 - CCNA_00635 0.15 -0.0
Or see this region's nucleotide sequence