Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00396

Experiment: PYE_noCalcium 25C survival rep1 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00395 and CCNA_00396 are separated by 90 nucleotidesCCNA_00396 and CCNA_00397 are separated by 130 nucleotides CCNA_00395: CCNA_00395 - feruloyl-CoA synthetase, at 411,052 to 412,842 _00395 CCNA_00396: CCNA_00396 - hypothetical protein, at 412,933 to 413,610 _00396 CCNA_00397: CCNA_00397 - acetolactate synthase, at 413,741 to 415,279 _00397 Position (kb) 412 413 414Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 411.937 kb on - strand, within CCNA_00395at 411.946 kb on + strand, within CCNA_00395at 411.964 kb on - strand, within CCNA_00395at 412.030 kb on + strand, within CCNA_00395at 412.035 kb on + strand, within CCNA_00395at 412.086 kb on - strand, within CCNA_00395at 412.089 kb on + strand, within CCNA_00395at 412.095 kb on + strand, within CCNA_00395at 412.097 kb on - strand, within CCNA_00395at 412.123 kb on + strand, within CCNA_00395at 412.149 kb on - strand, within CCNA_00395at 412.153 kb on + strand, within CCNA_00395at 412.153 kb on + strand, within CCNA_00395at 412.153 kb on + strand, within CCNA_00395at 412.161 kb on - strand, within CCNA_00395at 412.203 kb on + strand, within CCNA_00395at 412.208 kb on + strand, within CCNA_00395at 412.208 kb on + strand, within CCNA_00395at 412.218 kb on + strand, within CCNA_00395at 412.255 kb on + strand, within CCNA_00395at 412.258 kb on - strand, within CCNA_00395at 412.258 kb on - strand, within CCNA_00395at 412.258 kb on - strand, within CCNA_00395at 412.291 kb on + strand, within CCNA_00395at 412.297 kb on - strand, within CCNA_00395at 412.310 kb on + strand, within CCNA_00395at 412.320 kb on + strand, within CCNA_00395at 412.328 kb on - strand, within CCNA_00395at 412.333 kb on + strand, within CCNA_00395at 412.399 kb on - strand, within CCNA_00395at 412.411 kb on + strand, within CCNA_00395at 412.422 kb on - strand, within CCNA_00395at 412.460 kb on - strand, within CCNA_00395at 412.471 kb on - strand, within CCNA_00395at 412.533 kb on + strand, within CCNA_00395at 412.533 kb on + strand, within CCNA_00395at 412.533 kb on + strand, within CCNA_00395at 412.533 kb on + strand, within CCNA_00395at 412.533 kb on + strand, within CCNA_00395at 412.541 kb on - strand, within CCNA_00395at 412.546 kb on + strand, within CCNA_00395at 412.546 kb on + strand, within CCNA_00395at 412.556 kb on + strand, within CCNA_00395at 412.562 kb on + strand, within CCNA_00395at 412.588 kb on - strand, within CCNA_00395at 412.597 kb on + strand, within CCNA_00395at 412.599 kb on + strand, within CCNA_00395at 412.658 kb on - strand, within CCNA_00395at 412.662 kb on + strand, within CCNA_00395at 412.676 kb on - strandat 412.676 kb on - strandat 412.694 kb on + strandat 412.709 kb on - strandat 412.746 kb on + strandat 412.746 kb on + strandat 412.754 kb on - strandat 412.836 kb on + strandat 412.836 kb on + strandat 412.859 kb on - strandat 412.888 kb on - strandat 412.895 kb on + strandat 412.895 kb on + strandat 412.895 kb on + strandat 412.895 kb on + strandat 412.900 kb on + strandat 412.900 kb on + strandat 412.903 kb on - strandat 412.903 kb on - strandat 412.956 kb on - strandat 413.001 kb on + strand, within CCNA_00396at 413.011 kb on + strand, within CCNA_00396at 413.035 kb on - strand, within CCNA_00396at 413.037 kb on - strand, within CCNA_00396at 413.037 kb on - strand, within CCNA_00396at 413.040 kb on + strand, within CCNA_00396at 413.055 kb on - strand, within CCNA_00396at 413.095 kb on + strand, within CCNA_00396at 413.097 kb on - strand, within CCNA_00396at 413.141 kb on + strand, within CCNA_00396at 413.141 kb on + strand, within CCNA_00396at 413.161 kb on + strand, within CCNA_00396at 413.169 kb on - strand, within CCNA_00396at 413.169 kb on - strand, within CCNA_00396at 413.169 kb on - strand, within CCNA_00396at 413.186 kb on + strand, within CCNA_00396at 413.186 kb on + strand, within CCNA_00396at 413.195 kb on + strand, within CCNA_00396at 413.203 kb on - strand, within CCNA_00396at 413.203 kb on - strand, within CCNA_00396at 413.208 kb on - strand, within CCNA_00396at 413.212 kb on - strand, within CCNA_00396at 413.244 kb on - strand, within CCNA_00396at 413.289 kb on + strand, within CCNA_00396at 413.292 kb on + strand, within CCNA_00396at 413.297 kb on + strand, within CCNA_00396at 413.297 kb on + strand, within CCNA_00396at 413.305 kb on - strand, within CCNA_00396at 413.313 kb on + strand, within CCNA_00396at 413.321 kb on - strand, within CCNA_00396at 413.321 kb on - strand, within CCNA_00396at 413.410 kb on - strand, within CCNA_00396at 413.412 kb on - strand, within CCNA_00396at 413.435 kb on - strand, within CCNA_00396at 413.465 kb on - strand, within CCNA_00396at 413.494 kb on + strand, within CCNA_00396at 413.524 kb on + strand, within CCNA_00396at 413.537 kb on - strand, within CCNA_00396at 413.546 kb on + strandat 413.669 kb on + strandat 413.693 kb on - strandat 413.726 kb on + strandat 413.825 kb on - strandat 413.837 kb on + strandat 413.837 kb on + strandat 413.837 kb on + strandat 413.837 kb on + strandat 413.837 kb on + strandat 413.845 kb on - strandat 413.845 kb on - strandat 413.845 kb on - strandat 413.845 kb on - strandat 413.868 kb on + strandat 413.886 kb on - strandat 413.935 kb on + strand, within CCNA_00397at 413.945 kb on + strand, within CCNA_00397at 413.945 kb on - strand, within CCNA_00397at 413.953 kb on + strand, within CCNA_00397at 413.953 kb on - strand, within CCNA_00397at 413.953 kb on - strand, within CCNA_00397at 414.024 kb on + strand, within CCNA_00397at 414.042 kb on + strand, within CCNA_00397at 414.044 kb on + strand, within CCNA_00397at 414.100 kb on + strand, within CCNA_00397at 414.105 kb on + strand, within CCNA_00397at 414.106 kb on - strand, within CCNA_00397at 414.108 kb on - strand, within CCNA_00397at 414.110 kb on + strand, within CCNA_00397at 414.141 kb on + strand, within CCNA_00397at 414.199 kb on + strand, within CCNA_00397at 414.204 kb on + strand, within CCNA_00397at 414.207 kb on - strand, within CCNA_00397at 414.207 kb on - strand, within CCNA_00397at 414.252 kb on + strand, within CCNA_00397at 414.260 kb on - strand, within CCNA_00397at 414.293 kb on + strand, within CCNA_00397at 414.306 kb on - strand, within CCNA_00397at 414.317 kb on + strand, within CCNA_00397at 414.325 kb on - strand, within CCNA_00397at 414.341 kb on + strand, within CCNA_00397at 414.455 kb on + strand, within CCNA_00397at 414.506 kb on - strand, within CCNA_00397at 414.514 kb on + strand, within CCNA_00397at 414.539 kb on + strand, within CCNA_00397at 414.544 kb on - strand, within CCNA_00397at 414.584 kb on - strand, within CCNA_00397at 414.585 kb on + strand, within CCNA_00397

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep1 12 days
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411,937 - CCNA_00395 0.49 +0.0
411,946 + CCNA_00395 0.50 -2.0
411,964 - CCNA_00395 0.51 -3.9
412,030 + CCNA_00395 0.55 -3.8
412,035 + CCNA_00395 0.55 -3.5
412,086 - CCNA_00395 0.58 +0.5
412,089 + CCNA_00395 0.58 -1.1
412,095 + CCNA_00395 0.58 -1.0
412,097 - CCNA_00395 0.58 -1.0
412,123 + CCNA_00395 0.60 -2.6
412,149 - CCNA_00395 0.61 -0.1
412,153 + CCNA_00395 0.61 -0.8
412,153 + CCNA_00395 0.61 -3.0
412,153 + CCNA_00395 0.61 -3.1
412,161 - CCNA_00395 0.62 -0.8
412,203 + CCNA_00395 0.64 -2.1
412,208 + CCNA_00395 0.65 -1.9
412,208 + CCNA_00395 0.65 -3.7
412,218 + CCNA_00395 0.65 -1.4
412,255 + CCNA_00395 0.67 -3.6
412,258 - CCNA_00395 0.67 -1.4
412,258 - CCNA_00395 0.67 -3.0
412,258 - CCNA_00395 0.67 -3.1
412,291 + CCNA_00395 0.69 +0.8
412,297 - CCNA_00395 0.70 -1.7
412,310 + CCNA_00395 0.70 -4.5
412,320 + CCNA_00395 0.71 -0.8
412,328 - CCNA_00395 0.71 -0.5
412,333 + CCNA_00395 0.72 -1.2
412,399 - CCNA_00395 0.75 -0.8
412,411 + CCNA_00395 0.76 -2.9
412,422 - CCNA_00395 0.76 +1.0
412,460 - CCNA_00395 0.79 +0.5
412,471 - CCNA_00395 0.79 -2.3
412,533 + CCNA_00395 0.83 -1.3
412,533 + CCNA_00395 0.83 -2.8
412,533 + CCNA_00395 0.83 -2.4
412,533 + CCNA_00395 0.83 -2.7
412,533 + CCNA_00395 0.83 -3.0
412,541 - CCNA_00395 0.83 -0.8
412,546 + CCNA_00395 0.83 -1.1
412,546 + CCNA_00395 0.83 -3.6
412,556 + CCNA_00395 0.84 -2.2
412,562 + CCNA_00395 0.84 -3.2
412,588 - CCNA_00395 0.86 +0.5
412,597 + CCNA_00395 0.86 -1.0
412,599 + CCNA_00395 0.86 -1.7
412,658 - CCNA_00395 0.90 +2.0
412,662 + CCNA_00395 0.90 -0.8
412,676 - -1.0
412,676 - -1.3
412,694 + +0.5
412,709 - +0.5
412,746 + -2.5
412,746 + -2.7
412,754 - -2.8
412,836 + +0.8
412,836 + +0.5
412,859 - -0.7
412,888 - -1.8
412,895 + +1.0
412,895 + -1.0
412,895 + -0.1
412,895 + -0.0
412,900 + -0.1
412,900 + -0.2
412,903 - -0.0
412,903 - -1.2
412,956 - +1.5
413,001 + CCNA_00396 0.10 -0.6
413,011 + CCNA_00396 0.12 +2.0
413,035 - CCNA_00396 0.15 -2.0
413,037 - CCNA_00396 0.15 -0.4
413,037 - CCNA_00396 0.15 -0.7
413,040 + CCNA_00396 0.16 -0.3
413,055 - CCNA_00396 0.18 -1.4
413,095 + CCNA_00396 0.24 -1.3
413,097 - CCNA_00396 0.24 -0.5
413,141 + CCNA_00396 0.31 +0.4
413,141 + CCNA_00396 0.31 +1.3
413,161 + CCNA_00396 0.34 -2.4
413,169 - CCNA_00396 0.35 -0.2
413,169 - CCNA_00396 0.35 +0.2
413,169 - CCNA_00396 0.35 +0.1
413,186 + CCNA_00396 0.37 -2.2
413,186 + CCNA_00396 0.37 -1.0
413,195 + CCNA_00396 0.39 +1.4
413,203 - CCNA_00396 0.40 -1.1
413,203 - CCNA_00396 0.40 +0.3
413,208 - CCNA_00396 0.41 +0.7
413,212 - CCNA_00396 0.41 +0.2
413,244 - CCNA_00396 0.46 +1.0
413,289 + CCNA_00396 0.53 +0.5
413,292 + CCNA_00396 0.53 -0.1
413,297 + CCNA_00396 0.54 +0.5
413,297 + CCNA_00396 0.54 +0.5
413,305 - CCNA_00396 0.55 +0.7
413,313 + CCNA_00396 0.56 +0.5
413,321 - CCNA_00396 0.57 -0.1
413,321 - CCNA_00396 0.57 -1.8
413,410 - CCNA_00396 0.70 +0.5
413,412 - CCNA_00396 0.71 +1.0
413,435 - CCNA_00396 0.74 +0.6
413,465 - CCNA_00396 0.78 -0.6
413,494 + CCNA_00396 0.83 -1.2
413,524 + CCNA_00396 0.87 +0.0
413,537 - CCNA_00396 0.89 -0.8
413,546 + +1.6
413,669 + +0.6
413,693 - -0.8
413,726 + -1.9
413,825 - -0.5
413,837 + -2.5
413,837 + -1.3
413,837 + -3.7
413,837 + -2.8
413,837 + -3.7
413,845 - -0.8
413,845 - -0.5
413,845 - -1.0
413,845 - -0.4
413,868 + -1.4
413,886 - -0.8
413,935 + CCNA_00397 0.13 -2.3
413,945 + CCNA_00397 0.13 -2.1
413,945 - CCNA_00397 0.13 -2.1
413,953 + CCNA_00397 0.14 -1.4
413,953 - CCNA_00397 0.14 -0.8
413,953 - CCNA_00397 0.14 -2.1
414,024 + CCNA_00397 0.18 -2.8
414,042 + CCNA_00397 0.20 -1.9
414,044 + CCNA_00397 0.20 -1.7
414,100 + CCNA_00397 0.23 -2.3
414,105 + CCNA_00397 0.24 -1.5
414,106 - CCNA_00397 0.24 -1.5
414,108 - CCNA_00397 0.24 -2.6
414,110 + CCNA_00397 0.24 +0.5
414,141 + CCNA_00397 0.26 -0.8
414,199 + CCNA_00397 0.30 -4.0
414,204 + CCNA_00397 0.30 +0.0
414,207 - CCNA_00397 0.30 +0.0
414,207 - CCNA_00397 0.30 -2.7
414,252 + CCNA_00397 0.33 -2.4
414,260 - CCNA_00397 0.34 +0.0
414,293 + CCNA_00397 0.36 -4.4
414,306 - CCNA_00397 0.37 +0.5
414,317 + CCNA_00397 0.37 -2.5
414,325 - CCNA_00397 0.38 -2.2
414,341 + CCNA_00397 0.39 -3.9
414,455 + CCNA_00397 0.46 -3.3
414,506 - CCNA_00397 0.50 +0.0
414,514 + CCNA_00397 0.50 -1.7
414,539 + CCNA_00397 0.52 -3.1
414,544 - CCNA_00397 0.52 -2.9
414,584 - CCNA_00397 0.55 -1.4
414,585 + CCNA_00397 0.55 -5.4

Or see this region's nucleotide sequence