Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00324

Experiment: PYE_noCalcium 25C survival rep1 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00323 and CCNA_00324 are separated by 203 nucleotidesCCNA_00324 and CCNA_00326 are separated by 243 nucleotides CCNA_00323: CCNA_00323 - low-affinity zinc transport protein, at 336,631 to 337,728 _00323 CCNA_00324: CCNA_00324 - ExbD-family protein, at 337,932 to 338,390 _00324 CCNA_00326: CCNA_00326 - vegetatible incompatibility protein HET-E-1, at 338,634 to 339,665 _00326 Position (kb) 337 338 339Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 336.961 kb on + strand, within CCNA_00323at 336.961 kb on + strand, within CCNA_00323at 337.021 kb on + strand, within CCNA_00323at 337.139 kb on + strand, within CCNA_00323at 337.141 kb on - strand, within CCNA_00323at 337.143 kb on + strand, within CCNA_00323at 337.170 kb on + strand, within CCNA_00323at 337.211 kb on - strand, within CCNA_00323at 337.281 kb on - strand, within CCNA_00323at 337.291 kb on - strand, within CCNA_00323at 337.338 kb on + strand, within CCNA_00323at 337.345 kb on - strand, within CCNA_00323at 337.365 kb on - strand, within CCNA_00323at 337.377 kb on + strand, within CCNA_00323at 337.436 kb on + strand, within CCNA_00323at 337.437 kb on + strand, within CCNA_00323at 337.493 kb on - strand, within CCNA_00323at 337.547 kb on - strand, within CCNA_00323at 337.570 kb on + strand, within CCNA_00323at 337.578 kb on - strand, within CCNA_00323at 337.594 kb on + strand, within CCNA_00323at 337.602 kb on - strand, within CCNA_00323at 337.604 kb on - strand, within CCNA_00323at 337.644 kb on - strandat 337.663 kb on + strandat 337.671 kb on - strandat 337.688 kb on + strandat 337.731 kb on + strandat 337.732 kb on + strandat 337.747 kb on - strandat 337.759 kb on + strandat 337.779 kb on - strandat 337.795 kb on + strandat 337.796 kb on + strandat 337.803 kb on + strandat 337.803 kb on + strandat 337.811 kb on - strandat 337.816 kb on - strandat 337.830 kb on + strandat 337.837 kb on + strandat 337.842 kb on + strandat 337.842 kb on + strandat 337.842 kb on + strandat 337.842 kb on + strandat 337.850 kb on - strandat 337.850 kb on - strandat 337.850 kb on - strandat 337.891 kb on - strandat 337.961 kb on + strandat 337.963 kb on - strandat 337.963 kb on - strandat 337.999 kb on + strand, within CCNA_00324at 337.999 kb on + strand, within CCNA_00324at 338.011 kb on + strand, within CCNA_00324at 338.228 kb on + strand, within CCNA_00324at 338.244 kb on + strand, within CCNA_00324at 338.252 kb on - strand, within CCNA_00324at 338.261 kb on - strand, within CCNA_00324at 338.309 kb on + strand, within CCNA_00324at 338.382 kb on + strandat 338.385 kb on - strandat 338.385 kb on - strandat 338.390 kb on - strandat 338.390 kb on - strandat 338.400 kb on - strandat 338.452 kb on + strandat 338.455 kb on - strandat 338.460 kb on - strandat 338.603 kb on - strandat 338.604 kb on - strandat 338.604 kb on - strandat 338.618 kb on + strandat 338.618 kb on + strandat 338.618 kb on + strandat 338.618 kb on + strandat 338.618 kb on + strandat 338.626 kb on - strandat 338.626 kb on - strandat 338.626 kb on - strandat 338.731 kb on - strandat 338.741 kb on - strand, within CCNA_00326at 338.759 kb on - strand, within CCNA_00326at 338.784 kb on + strand, within CCNA_00326at 338.792 kb on - strand, within CCNA_00326at 338.804 kb on + strand, within CCNA_00326at 338.850 kb on + strand, within CCNA_00326at 338.881 kb on + strand, within CCNA_00326at 338.941 kb on + strand, within CCNA_00326at 338.946 kb on + strand, within CCNA_00326at 338.997 kb on + strand, within CCNA_00326at 339.005 kb on - strand, within CCNA_00326at 339.016 kb on + strand, within CCNA_00326at 339.042 kb on + strand, within CCNA_00326at 339.046 kb on - strand, within CCNA_00326at 339.050 kb on - strand, within CCNA_00326at 339.096 kb on + strand, within CCNA_00326at 339.138 kb on + strand, within CCNA_00326at 339.138 kb on + strand, within CCNA_00326at 339.138 kb on + strand, within CCNA_00326at 339.138 kb on + strand, within CCNA_00326at 339.138 kb on + strand, within CCNA_00326at 339.138 kb on + strand, within CCNA_00326at 339.138 kb on + strand, within CCNA_00326at 339.146 kb on - strand, within CCNA_00326at 339.146 kb on - strand, within CCNA_00326at 339.146 kb on - strand, within CCNA_00326at 339.191 kb on + strand, within CCNA_00326at 339.289 kb on + strand, within CCNA_00326at 339.308 kb on + strand, within CCNA_00326at 339.308 kb on + strand, within CCNA_00326at 339.317 kb on - strand, within CCNA_00326at 339.327 kb on + strand, within CCNA_00326at 339.347 kb on + strand, within CCNA_00326at 339.347 kb on + strand, within CCNA_00326at 339.355 kb on - strand, within CCNA_00326

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep1 12 days
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336,961 + CCNA_00323 0.30 -0.5
336,961 + CCNA_00323 0.30 +0.1
337,021 + CCNA_00323 0.36 +0.3
337,139 + CCNA_00323 0.46 +1.0
337,141 - CCNA_00323 0.46 +0.0
337,143 + CCNA_00323 0.47 +0.0
337,170 + CCNA_00323 0.49 +0.5
337,211 - CCNA_00323 0.53 -1.7
337,281 - CCNA_00323 0.59 -0.4
337,291 - CCNA_00323 0.60 -0.8
337,338 + CCNA_00323 0.64 -0.3
337,345 - CCNA_00323 0.65 -1.1
337,365 - CCNA_00323 0.67 -0.5
337,377 + CCNA_00323 0.68 -0.5
337,436 + CCNA_00323 0.73 +0.4
337,437 + CCNA_00323 0.73 +0.0
337,493 - CCNA_00323 0.79 -0.3
337,547 - CCNA_00323 0.83 -0.8
337,570 + CCNA_00323 0.86 -0.0
337,578 - CCNA_00323 0.86 -1.5
337,594 + CCNA_00323 0.88 +0.2
337,602 - CCNA_00323 0.88 -0.3
337,604 - CCNA_00323 0.89 -0.2
337,644 - +3.0
337,663 + +0.5
337,671 - -1.3
337,688 + +0.7
337,731 + +0.7
337,732 + +0.5
337,747 - +0.6
337,759 + +0.5
337,779 - -0.2
337,795 + +0.2
337,796 + -0.0
337,803 + +0.9
337,803 + +0.5
337,811 - -0.3
337,816 - +0.4
337,830 + +1.0
337,837 + +1.2
337,842 + +0.5
337,842 + -0.1
337,842 + +0.8
337,842 + +0.2
337,850 - +0.4
337,850 - +0.1
337,850 - +0.7
337,891 - +0.8
337,961 + -2.4
337,963 - -5.0
337,963 - -5.3
337,999 + CCNA_00324 0.15 +0.4
337,999 + CCNA_00324 0.15 -2.4
338,011 + CCNA_00324 0.17 +0.0
338,228 + CCNA_00324 0.64 +0.0
338,244 + CCNA_00324 0.68 -4.5
338,252 - CCNA_00324 0.70 -6.0
338,261 - CCNA_00324 0.72 -3.0
338,309 + CCNA_00324 0.82 -2.2
338,382 + -1.3
338,385 - -4.7
338,385 - -6.6
338,390 - -4.0
338,390 - -4.3
338,400 - -0.3
338,452 + -3.2
338,455 - -4.2
338,460 - -4.8
338,603 - -2.4
338,604 - -0.6
338,604 - -0.9
338,618 + -1.7
338,618 + +0.2
338,618 + +0.1
338,618 + -1.8
338,618 + -0.7
338,626 - +2.0
338,626 - +1.4
338,626 - -2.5
338,731 - -1.0
338,741 - CCNA_00326 0.10 -1.6
338,759 - CCNA_00326 0.12 -1.8
338,784 + CCNA_00326 0.15 -0.0
338,792 - CCNA_00326 0.15 -0.3
338,804 + CCNA_00326 0.16 +0.7
338,850 + CCNA_00326 0.21 +0.4
338,881 + CCNA_00326 0.24 -0.1
338,941 + CCNA_00326 0.30 +1.2
338,946 + CCNA_00326 0.30 -0.5
338,997 + CCNA_00326 0.35 +0.1
339,005 - CCNA_00326 0.36 -0.4
339,016 + CCNA_00326 0.37 +0.3
339,042 + CCNA_00326 0.40 +0.2
339,046 - CCNA_00326 0.40 +0.2
339,050 - CCNA_00326 0.40 -0.3
339,096 + CCNA_00326 0.45 +0.5
339,138 + CCNA_00326 0.49 -0.0
339,138 + CCNA_00326 0.49 -0.7
339,138 + CCNA_00326 0.49 +0.3
339,138 + CCNA_00326 0.49 -0.6
339,138 + CCNA_00326 0.49 -0.2
339,138 + CCNA_00326 0.49 -0.2
339,138 + CCNA_00326 0.49 -0.0
339,146 - CCNA_00326 0.50 -2.8
339,146 - CCNA_00326 0.50 +1.5
339,146 - CCNA_00326 0.50 +1.3
339,191 + CCNA_00326 0.54 +0.2
339,289 + CCNA_00326 0.63 +0.6
339,308 + CCNA_00326 0.65 +0.2
339,308 + CCNA_00326 0.65 +0.6
339,317 - CCNA_00326 0.66 -1.3
339,327 + CCNA_00326 0.67 +0.0
339,347 + CCNA_00326 0.69 -0.0
339,347 + CCNA_00326 0.69 -0.5
339,355 - CCNA_00326 0.70 -1.0

Or see this region's nucleotide sequence