Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00286

Experiment: PYE_noCalcium 25C survival rep1 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00285 and CCNA_00286 are separated by 192 nucleotidesCCNA_00286 and CCNA_00287 are separated by 18 nucleotides CCNA_00285: CCNA_00285 - acetylglutamate kinase, at 296,628 to 297,542 _00285 CCNA_00286: CCNA_00286 - two-component receiver domain protein LovR, at 297,735 to 298,193 _00286 CCNA_00287: CCNA_00287 - photosensory histidine protein kinase LovK, at 298,212 to 299,318 _00287 Position (kb) 297 298 299Strain fitness (log2 ratio) -2 -1 0 1 2 3at 297.617 kb on + strandat 297.619 kb on + strandat 297.635 kb on - strandat 297.682 kb on - strandat 297.746 kb on - strandat 297.765 kb on - strandat 297.769 kb on + strandat 297.769 kb on + strandat 297.769 kb on + strandat 297.769 kb on + strandat 297.769 kb on + strandat 297.769 kb on + strandat 297.769 kb on + strandat 297.777 kb on - strandat 297.777 kb on - strandat 297.777 kb on - strandat 297.777 kb on - strandat 297.777 kb on - strandat 297.777 kb on - strandat 297.779 kb on + strandat 297.806 kb on + strand, within CCNA_00286at 297.846 kb on + strandat 297.854 kb on - strand, within CCNA_00286at 297.854 kb on - strand, within CCNA_00286at 297.869 kb on + strand, within CCNA_00286at 297.874 kb on + strand, within CCNA_00286at 297.877 kb on - strand, within CCNA_00286at 297.877 kb on - strand, within CCNA_00286at 297.882 kb on - strand, within CCNA_00286at 297.882 kb on - strand, within CCNA_00286at 297.893 kb on + strand, within CCNA_00286at 297.914 kb on - strand, within CCNA_00286at 297.927 kb on - strand, within CCNA_00286at 297.933 kb on - strand, within CCNA_00286at 297.940 kb on + strand, within CCNA_00286at 297.940 kb on + strand, within CCNA_00286at 297.940 kb on + strand, within CCNA_00286at 297.940 kb on + strand, within CCNA_00286at 297.940 kb on + strand, within CCNA_00286at 297.940 kb on + strand, within CCNA_00286at 297.940 kb on + strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.948 kb on - strand, within CCNA_00286at 297.961 kb on + strand, within CCNA_00286at 297.984 kb on + strand, within CCNA_00286at 297.992 kb on - strand, within CCNA_00286at 297.997 kb on + strand, within CCNA_00286at 297.997 kb on - strand, within CCNA_00286at 297.999 kb on + strand, within CCNA_00286at 298.045 kb on - strand, within CCNA_00286at 298.081 kb on - strand, within CCNA_00286at 298.114 kb on + strand, within CCNA_00286at 298.119 kb on + strand, within CCNA_00286at 298.188 kb on + strandat 298.222 kb on + strandat 298.259 kb on - strandat 298.292 kb on + strandat 298.345 kb on + strand, within CCNA_00287at 298.353 kb on - strand, within CCNA_00287at 298.353 kb on - strand, within CCNA_00287at 298.355 kb on + strand, within CCNA_00287at 298.358 kb on - strand, within CCNA_00287at 298.358 kb on - strand, within CCNA_00287at 298.395 kb on + strand, within CCNA_00287at 298.459 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.488 kb on + strand, within CCNA_00287at 298.495 kb on + strand, within CCNA_00287at 298.496 kb on - strand, within CCNA_00287at 298.496 kb on - strand, within CCNA_00287at 298.496 kb on - strand, within CCNA_00287at 298.538 kb on + strand, within CCNA_00287at 298.562 kb on + strand, within CCNA_00287at 298.585 kb on + strand, within CCNA_00287at 298.596 kb on + strand, within CCNA_00287at 298.620 kb on - strand, within CCNA_00287at 298.633 kb on + strand, within CCNA_00287at 298.674 kb on - strand, within CCNA_00287at 298.674 kb on - strand, within CCNA_00287at 298.677 kb on + strand, within CCNA_00287at 298.677 kb on + strand, within CCNA_00287at 298.690 kb on - strand, within CCNA_00287at 298.695 kb on - strand, within CCNA_00287at 298.720 kb on - strand, within CCNA_00287at 298.723 kb on + strand, within CCNA_00287at 298.723 kb on + strand, within CCNA_00287at 298.753 kb on - strand, within CCNA_00287at 298.755 kb on - strand, within CCNA_00287at 298.787 kb on - strand, within CCNA_00287at 298.787 kb on - strand, within CCNA_00287at 298.824 kb on + strand, within CCNA_00287at 298.827 kb on - strand, within CCNA_00287at 298.829 kb on + strand, within CCNA_00287at 298.832 kb on + strandat 298.832 kb on + strand, within CCNA_00287at 298.854 kb on + strand, within CCNA_00287at 298.856 kb on + strand, within CCNA_00287at 298.862 kb on - strand, within CCNA_00287at 298.870 kb on + strand, within CCNA_00287at 299.074 kb on + strand, within CCNA_00287at 299.074 kb on + strand, within CCNA_00287at 299.074 kb on + strand, within CCNA_00287at 299.074 kb on + strand, within CCNA_00287at 299.074 kb on + strand, within CCNA_00287at 299.074 kb on + strand, within CCNA_00287at 299.082 kb on - strand, within CCNA_00287at 299.082 kb on - strand, within CCNA_00287at 299.082 kb on - strand, within CCNA_00287at 299.128 kb on - strand, within CCNA_00287at 299.144 kb on - strand, within CCNA_00287at 299.150 kb on + strand, within CCNA_00287at 299.164 kb on - strand, within CCNA_00287

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep1 12 days
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297,617 + +2.0
297,619 + -0.8
297,635 - -0.9
297,682 - -0.2
297,746 - +2.1
297,765 - -1.7
297,769 + -1.3
297,769 + -0.3
297,769 + -0.2
297,769 + -0.8
297,769 + -0.6
297,769 + +2.0
297,769 + +1.8
297,777 - +2.9
297,777 - +1.8
297,777 - +1.7
297,777 - +0.7
297,777 - +2.9
297,777 - +1.4
297,779 + +1.3
297,806 + CCNA_00286 0.15 +1.6
297,846 + +2.6
297,854 - CCNA_00286 0.26 +2.0
297,854 - CCNA_00286 0.26 +0.6
297,869 + CCNA_00286 0.29 +1.4
297,874 + CCNA_00286 0.30 -1.0
297,877 - CCNA_00286 0.31 +2.2
297,877 - CCNA_00286 0.31 +1.5
297,882 - CCNA_00286 0.32 +1.3
297,882 - CCNA_00286 0.32 +0.5
297,893 + CCNA_00286 0.34 +2.0
297,914 - CCNA_00286 0.39 +1.0
297,927 - CCNA_00286 0.42 +1.2
297,933 - CCNA_00286 0.43 +1.0
297,940 + CCNA_00286 0.45 +1.2
297,940 + CCNA_00286 0.45 +1.9
297,940 + CCNA_00286 0.45 +1.9
297,940 + CCNA_00286 0.45 +2.0
297,940 + CCNA_00286 0.45 +1.9
297,940 + CCNA_00286 0.45 +1.2
297,940 + CCNA_00286 0.45 +1.6
297,948 - CCNA_00286 0.46 +2.2
297,948 - CCNA_00286 0.46 -0.1
297,948 - CCNA_00286 0.46 +1.0
297,948 - CCNA_00286 0.46 +1.1
297,948 - CCNA_00286 0.46 +1.4
297,948 - CCNA_00286 0.46 +0.8
297,948 - CCNA_00286 0.46 +1.2
297,948 - CCNA_00286 0.46 +0.9
297,961 + CCNA_00286 0.49 +0.4
297,984 + CCNA_00286 0.54 +0.3
297,992 - CCNA_00286 0.56 +1.9
297,997 + CCNA_00286 0.57 -2.0
297,997 - CCNA_00286 0.57 +0.1
297,999 + CCNA_00286 0.58 +1.0
298,045 - CCNA_00286 0.68 +0.5
298,081 - CCNA_00286 0.75 +1.7
298,114 + CCNA_00286 0.83 +2.3
298,119 + CCNA_00286 0.84 -0.8
298,188 + +0.9
298,222 + +2.3
298,259 - +1.1
298,292 + +0.7
298,345 + CCNA_00287 0.12 +1.8
298,353 - CCNA_00287 0.13 +2.0
298,353 - CCNA_00287 0.13 +0.4
298,355 + CCNA_00287 0.13 +1.0
298,358 - CCNA_00287 0.13 +1.4
298,358 - CCNA_00287 0.13 +1.9
298,395 + CCNA_00287 0.17 +1.4
298,459 + CCNA_00287 0.22 -1.3
298,488 + CCNA_00287 0.25 -0.1
298,488 + CCNA_00287 0.25 +2.3
298,488 + CCNA_00287 0.25 +1.2
298,488 + CCNA_00287 0.25 +1.5
298,488 + CCNA_00287 0.25 +1.5
298,488 + CCNA_00287 0.25 +1.2
298,488 + CCNA_00287 0.25 +0.6
298,495 + CCNA_00287 0.26 +0.4
298,496 - CCNA_00287 0.26 +1.1
298,496 - CCNA_00287 0.26 +1.7
298,496 - CCNA_00287 0.26 +1.4
298,538 + CCNA_00287 0.29 +0.7
298,562 + CCNA_00287 0.32 -1.8
298,585 + CCNA_00287 0.34 +3.2
298,596 + CCNA_00287 0.35 +2.3
298,620 - CCNA_00287 0.37 +1.5
298,633 + CCNA_00287 0.38 +0.3
298,674 - CCNA_00287 0.42 +2.0
298,674 - CCNA_00287 0.42 +2.6
298,677 + CCNA_00287 0.42 +0.5
298,677 + CCNA_00287 0.42 +1.4
298,690 - CCNA_00287 0.43 +1.5
298,695 - CCNA_00287 0.44 +1.7
298,720 - CCNA_00287 0.46 +1.9
298,723 + CCNA_00287 0.46 -1.2
298,723 + CCNA_00287 0.46 -0.6
298,753 - CCNA_00287 0.49 +0.7
298,755 - CCNA_00287 0.49 +1.4
298,787 - CCNA_00287 0.52 +1.9
298,787 - CCNA_00287 0.52 +2.6
298,824 + CCNA_00287 0.55 +1.4
298,827 - CCNA_00287 0.56 +2.2
298,829 + CCNA_00287 0.56 +1.5
298,832 + -0.3
298,832 + CCNA_00287 0.56 +1.9
298,854 + CCNA_00287 0.58 -1.9
298,856 + CCNA_00287 0.58 +0.0
298,862 - CCNA_00287 0.59 +1.1
298,870 + CCNA_00287 0.59 -0.4
299,074 + CCNA_00287 0.78 -2.3
299,074 + CCNA_00287 0.78 +0.7
299,074 + CCNA_00287 0.78 +0.7
299,074 + CCNA_00287 0.78 +1.6
299,074 + CCNA_00287 0.78 +0.9
299,074 + CCNA_00287 0.78 +0.4
299,082 - CCNA_00287 0.79 -0.0
299,082 - CCNA_00287 0.79 -0.7
299,082 - CCNA_00287 0.79 -1.0
299,128 - CCNA_00287 0.83 +1.1
299,144 - CCNA_00287 0.84 +1.3
299,150 + CCNA_00287 0.85 +2.2
299,164 - CCNA_00287 0.86 +0.9

Or see this region's nucleotide sequence