Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00165

Experiment: PYE_noCalcium 25C survival rep1 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00164 and CCNA_00165 overlap by 7 nucleotidesCCNA_00165 and CCNA_03915 are separated by 198 nucleotidesCCNA_03915 and CCNA_00166 are separated by 161 nucleotides CCNA_00164: CCNA_00164 - O-antigen polymerase, at 175,173 to 177,098 _00164 CCNA_00165: CCNA_00165 - polyisoprenylphosphate hexose-1-phosphotransferase pssY, at 177,092 to 177,745 _00165 CCNA_03915: CCNA_03915 - hypothetical protein, at 177,944 to 178,090 _03915 CCNA_00166: CCNA_00166 - putative transglutaminase-like cysteine proteinase, at 178,252 to 179,070 _00166 Position (kb) 177 178Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 176.126 kb on + strand, within CCNA_00164at 176.146 kb on + strand, within CCNA_00164at 176.175 kb on + strand, within CCNA_00164at 176.238 kb on + strand, within CCNA_00164at 176.303 kb on - strand, within CCNA_00164at 176.320 kb on - strand, within CCNA_00164at 176.385 kb on + strand, within CCNA_00164at 176.385 kb on + strand, within CCNA_00164at 176.388 kb on - strand, within CCNA_00164at 176.421 kb on + strand, within CCNA_00164at 176.434 kb on - strand, within CCNA_00164at 176.501 kb on + strand, within CCNA_00164at 176.584 kb on - strand, within CCNA_00164at 176.628 kb on + strand, within CCNA_00164at 176.630 kb on + strand, within CCNA_00164at 176.630 kb on + strand, within CCNA_00164at 176.638 kb on - strand, within CCNA_00164at 176.638 kb on - strand, within CCNA_00164at 176.690 kb on + strand, within CCNA_00164at 176.698 kb on - strand, within CCNA_00164at 176.711 kb on + strand, within CCNA_00164at 176.719 kb on - strand, within CCNA_00164at 176.794 kb on - strand, within CCNA_00164at 176.846 kb on - strand, within CCNA_00164at 176.870 kb on + strand, within CCNA_00164at 176.972 kb on + strandat 176.980 kb on - strandat 177.006 kb on + strandat 177.019 kb on + strandat 177.022 kb on + strandat 177.048 kb on - strandat 177.067 kb on - strandat 177.085 kb on - strandat 177.101 kb on + strandat 177.119 kb on + strandat 177.119 kb on + strandat 177.119 kb on + strandat 177.124 kb on + strandat 177.149 kb on - strandat 177.167 kb on + strand, within CCNA_00165at 177.167 kb on + strand, within CCNA_00165at 177.167 kb on + strand, within CCNA_00165at 177.167 kb on + strand, within CCNA_00165at 177.167 kb on + strand, within CCNA_00165at 177.167 kb on + strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.209 kb on + strand, within CCNA_00165at 177.217 kb on - strand, within CCNA_00165at 177.220 kb on + strand, within CCNA_00165at 177.240 kb on + strand, within CCNA_00165at 177.240 kb on + strand, within CCNA_00165at 177.248 kb on - strand, within CCNA_00165at 177.248 kb on - strand, within CCNA_00165at 177.255 kb on + strand, within CCNA_00165at 177.258 kb on - strandat 177.263 kb on - strand, within CCNA_00165at 177.312 kb on + strand, within CCNA_00165at 177.320 kb on - strand, within CCNA_00165at 177.320 kb on - strandat 177.320 kb on - strand, within CCNA_00165at 177.378 kb on + strand, within CCNA_00165at 177.400 kb on + strand, within CCNA_00165at 177.445 kb on - strand, within CCNA_00165at 177.454 kb on - strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.570 kb on - strand, within CCNA_00165at 177.570 kb on - strand, within CCNA_00165at 177.686 kb on - strandat 177.699 kb on + strandat 177.714 kb on + strandat 177.719 kb on + strandat 177.722 kb on - strandat 177.771 kb on + strandat 177.785 kb on - strandat 177.795 kb on - strandat 177.802 kb on + strandat 177.808 kb on - strandat 177.828 kb on - strandat 177.828 kb on - strandat 177.863 kb on + strandat 177.881 kb on + strandat 177.906 kb on - strandat 178.056 kb on - strand, within CCNA_03915at 178.084 kb on + strandat 178.084 kb on + strandat 178.092 kb on - strandat 178.092 kb on - strandat 178.099 kb on + strandat 178.108 kb on + strandat 178.167 kb on + strandat 178.175 kb on - strandat 178.179 kb on + strandat 178.179 kb on + strandat 178.187 kb on + strandat 178.187 kb on - strandat 178.206 kb on - strandat 178.218 kb on + strandat 178.228 kb on + strandat 178.235 kb on + strandat 178.275 kb on - strandat 178.293 kb on + strandat 178.309 kb on + strandat 178.317 kb on - strandat 178.320 kb on + strandat 178.337 kb on + strand, within CCNA_00166at 178.346 kb on - strand, within CCNA_00166at 178.346 kb on - strand, within CCNA_00166at 178.346 kb on - strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.402 kb on + strand, within CCNA_00166at 178.424 kb on + strand, within CCNA_00166at 178.424 kb on + strand, within CCNA_00166at 178.449 kb on + strand, within CCNA_00166at 178.483 kb on + strand, within CCNA_00166at 178.502 kb on + strand, within CCNA_00166at 178.502 kb on + strand, within CCNA_00166at 178.510 kb on - strand, within CCNA_00166at 178.510 kb on - strand, within CCNA_00166at 178.520 kb on + strand, within CCNA_00166at 178.535 kb on + strand, within CCNA_00166at 178.535 kb on + strand, within CCNA_00166at 178.543 kb on - strand, within CCNA_00166at 178.543 kb on - strand, within CCNA_00166at 178.543 kb on - strand, within CCNA_00166at 178.545 kb on + strand, within CCNA_00166at 178.548 kb on - strand, within CCNA_00166at 178.548 kb on - strand, within CCNA_00166at 178.548 kb on - strand, within CCNA_00166at 178.597 kb on - strand, within CCNA_00166at 178.610 kb on - strand, within CCNA_00166at 178.646 kb on - strand, within CCNA_00166at 178.649 kb on + strand, within CCNA_00166at 178.654 kb on + strand, within CCNA_00166at 178.654 kb on + strand, within CCNA_00166at 178.654 kb on + strand, within CCNA_00166at 178.657 kb on - strand, within CCNA_00166at 178.662 kb on - strand, within CCNA_00166at 178.662 kb on - strand, within CCNA_00166at 178.664 kb on + strand, within CCNA_00166at 178.664 kb on + strand, within CCNA_00166at 178.664 kb on + strand, within CCNA_00166at 178.664 kb on + strand, within CCNA_00166at 178.672 kb on - strand, within CCNA_00166at 178.691 kb on - strand, within CCNA_00166at 178.696 kb on + strand, within CCNA_00166at 178.717 kb on + strand, within CCNA_00166at 178.725 kb on - strand, within CCNA_00166at 178.725 kb on - strand, within CCNA_00166

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep1 12 days
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176,126 + CCNA_00164 0.49 -0.4
176,146 + CCNA_00164 0.51 +0.4
176,175 + CCNA_00164 0.52 +0.1
176,238 + CCNA_00164 0.55 +0.4
176,303 - CCNA_00164 0.59 -1.9
176,320 - CCNA_00164 0.60 -0.9
176,385 + CCNA_00164 0.63 -0.2
176,385 + CCNA_00164 0.63 +3.4
176,388 - CCNA_00164 0.63 -1.1
176,421 + CCNA_00164 0.65 +0.1
176,434 - CCNA_00164 0.65 -0.3
176,501 + CCNA_00164 0.69 +1.1
176,584 - CCNA_00164 0.73 -0.5
176,628 + CCNA_00164 0.76 +0.2
176,630 + CCNA_00164 0.76 +0.3
176,630 + CCNA_00164 0.76 +0.3
176,638 - CCNA_00164 0.76 +0.2
176,638 - CCNA_00164 0.76 -2.3
176,690 + CCNA_00164 0.79 +0.4
176,698 - CCNA_00164 0.79 +0.1
176,711 + CCNA_00164 0.80 +0.4
176,719 - CCNA_00164 0.80 +0.1
176,794 - CCNA_00164 0.84 +0.3
176,846 - CCNA_00164 0.87 -0.4
176,870 + CCNA_00164 0.88 +0.4
176,972 + +0.5
176,980 - -1.6
177,006 + +0.4
177,019 + +0.2
177,022 + +0.5
177,048 - -0.5
177,067 - -0.5
177,085 - -0.1
177,101 + +1.8
177,119 + +1.2
177,119 + +1.5
177,119 + +1.3
177,124 + +1.2
177,149 - +1.8
177,167 + CCNA_00165 0.11 +1.9
177,167 + CCNA_00165 0.11 +1.3
177,167 + CCNA_00165 0.11 +1.4
177,167 + CCNA_00165 0.11 +1.0
177,167 + CCNA_00165 0.11 +1.9
177,167 + CCNA_00165 0.11 +1.3
177,175 - CCNA_00165 0.13 +0.8
177,175 - CCNA_00165 0.13 +0.6
177,175 - CCNA_00165 0.13 +1.1
177,175 - CCNA_00165 0.13 +0.6
177,175 - CCNA_00165 0.13 +0.5
177,175 - CCNA_00165 0.13 +1.4
177,175 - CCNA_00165 0.13 +0.6
177,175 - CCNA_00165 0.13 +0.5
177,209 + CCNA_00165 0.18 +0.2
177,217 - CCNA_00165 0.19 +1.6
177,220 + CCNA_00165 0.20 -0.9
177,240 + CCNA_00165 0.23 +0.1
177,240 + CCNA_00165 0.23 +1.1
177,248 - CCNA_00165 0.24 +0.2
177,248 - CCNA_00165 0.24 +0.7
177,255 + CCNA_00165 0.25 +0.9
177,258 - -0.3
177,263 - CCNA_00165 0.26 +0.4
177,312 + CCNA_00165 0.34 +1.2
177,320 - CCNA_00165 0.35 -1.8
177,320 - +2.6
177,320 - CCNA_00165 0.35 -2.1
177,378 + CCNA_00165 0.44 +0.7
177,400 + CCNA_00165 0.47 +0.6
177,445 - CCNA_00165 0.54 +0.8
177,454 - CCNA_00165 0.55 +0.7
177,472 + CCNA_00165 0.58 +0.9
177,472 + CCNA_00165 0.58 +1.0
177,472 + CCNA_00165 0.58 +2.2
177,472 + CCNA_00165 0.58 +1.8
177,570 - CCNA_00165 0.73 +0.6
177,570 - CCNA_00165 0.73 -0.2
177,686 - +1.2
177,699 + -0.3
177,714 + -2.6
177,719 + +1.5
177,722 - -0.4
177,771 + -1.1
177,785 - -1.0
177,795 - -0.2
177,802 + -0.1
177,808 - +1.6
177,828 - -0.5
177,828 - -3.1
177,863 + +0.5
177,881 + +0.2
177,906 - +1.1
178,056 - CCNA_03915 0.76 -2.3
178,084 + +0.5
178,084 + +0.8
178,092 - -0.4
178,092 - -2.0
178,099 + +0.8
178,108 + +0.4
178,167 + -0.5
178,175 - -0.2
178,179 + +0.1
178,179 + +0.6
178,187 + -1.1
178,187 - -1.2
178,206 - -0.8
178,218 + -2.1
178,228 + -1.0
178,235 + -1.1
178,275 - +0.9
178,293 + -0.5
178,309 + -2.7
178,317 - -0.7
178,320 + -1.5
178,337 + CCNA_00166 0.10 -1.2
178,346 - CCNA_00166 0.11 -1.0
178,346 - CCNA_00166 0.11 -0.1
178,346 - CCNA_00166 0.11 +0.6
178,389 - CCNA_00166 0.17 -0.0
178,389 - CCNA_00166 0.17 -0.1
178,389 - CCNA_00166 0.17 -1.1
178,389 - CCNA_00166 0.17 -1.0
178,389 - CCNA_00166 0.17 +1.0
178,402 + CCNA_00166 0.18 -0.3
178,424 + CCNA_00166 0.21 -1.3
178,424 + CCNA_00166 0.21 -1.3
178,449 + CCNA_00166 0.24 +0.5
178,483 + CCNA_00166 0.28 -1.0
178,502 + CCNA_00166 0.31 +0.2
178,502 + CCNA_00166 0.31 -0.1
178,510 - CCNA_00166 0.32 -0.2
178,510 - CCNA_00166 0.32 +0.0
178,520 + CCNA_00166 0.33 -0.2
178,535 + CCNA_00166 0.35 +1.0
178,535 + CCNA_00166 0.35 +1.0
178,543 - CCNA_00166 0.36 +0.6
178,543 - CCNA_00166 0.36 -0.6
178,543 - CCNA_00166 0.36 +0.2
178,545 + CCNA_00166 0.36 +0.9
178,548 - CCNA_00166 0.36 -0.7
178,548 - CCNA_00166 0.36 +0.5
178,548 - CCNA_00166 0.36 +0.5
178,597 - CCNA_00166 0.42 -0.7
178,610 - CCNA_00166 0.44 -0.1
178,646 - CCNA_00166 0.48 -0.3
178,649 + CCNA_00166 0.48 -2.0
178,654 + CCNA_00166 0.49 +1.6
178,654 + CCNA_00166 0.49 -0.9
178,654 + CCNA_00166 0.49 -1.9
178,657 - CCNA_00166 0.49 -1.3
178,662 - CCNA_00166 0.50 -0.2
178,662 - CCNA_00166 0.50 +0.2
178,664 + CCNA_00166 0.50 +1.6
178,664 + CCNA_00166 0.50 -3.0
178,664 + CCNA_00166 0.50 -2.0
178,664 + CCNA_00166 0.50 -1.5
178,672 - CCNA_00166 0.51 +0.2
178,691 - CCNA_00166 0.54 +0.4
178,696 + CCNA_00166 0.54 +0.5
178,717 + CCNA_00166 0.57 -1.8
178,725 - CCNA_00166 0.58 -1.2
178,725 - CCNA_00166 0.58 +0.5

Or see this region's nucleotide sequence