Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17380

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17370 and BWI76_RS17375 are separated by 10 nucleotidesBWI76_RS17375 and BWI76_RS17380 are separated by 1 nucleotidesBWI76_RS17380 and BWI76_RS17385 are separated by 248 nucleotides BWI76_RS17370: BWI76_RS17370 - nitrate transporter NasD, at 3,604,746 to 3,605,534 _RS17370 BWI76_RS17375: BWI76_RS17375 - nitrate ABC transporter, permease protein, at 3,605,545 to 3,606,429 _RS17375 BWI76_RS17380: BWI76_RS17380 - nitrate transporter component, at 3,606,431 to 3,607,687 _RS17380 BWI76_RS17385: BWI76_RS17385 - nitrate regulatory protein, at 3,607,936 to 3,609,126 _RS17385 Position (kb) 3606 3607 3608Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3605.452 kb on - strand, within BWI76_RS17370at 3605.877 kb on + strand, within BWI76_RS17375at 3606.323 kb on - strand, within BWI76_RS17375at 3606.793 kb on + strand, within BWI76_RS17380at 3607.015 kb on + strand, within BWI76_RS17380at 3607.519 kb on - strand, within BWI76_RS17380at 3607.567 kb on - strandat 3607.690 kb on - strandat 3607.735 kb on - strandat 3607.747 kb on + strandat 3607.869 kb on + strandat 3607.973 kb on - strandat 3608.084 kb on + strand, within BWI76_RS17385at 3608.152 kb on - strand, within BWI76_RS17385at 3608.211 kb on + strand, within BWI76_RS17385at 3608.219 kb on - strand, within BWI76_RS17385at 3608.219 kb on - strand, within BWI76_RS17385at 3608.221 kb on - strand, within BWI76_RS17385at 3608.288 kb on + strand, within BWI76_RS17385

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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3,605,452 - BWI76_RS17370 0.89 +0.1
3,605,877 + BWI76_RS17375 0.38 -3.4
3,606,323 - BWI76_RS17375 0.88 -2.4
3,606,793 + BWI76_RS17380 0.29 -4.5
3,607,015 + BWI76_RS17380 0.46 -3.8
3,607,519 - BWI76_RS17380 0.87 -4.0
3,607,567 - -3.6
3,607,690 - +0.2
3,607,735 - -4.8
3,607,747 + -2.7
3,607,869 + -1.2
3,607,973 - -3.5
3,608,084 + BWI76_RS17385 0.12 -2.8
3,608,152 - BWI76_RS17385 0.18 -1.8
3,608,211 + BWI76_RS17385 0.23 -3.4
3,608,219 - BWI76_RS17385 0.24 -3.2
3,608,219 - BWI76_RS17385 0.24 -4.7
3,608,221 - BWI76_RS17385 0.24 -3.3
3,608,288 + BWI76_RS17385 0.30 -2.4

Or see this region's nucleotide sequence