Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14980

Experiment: reconstituted MRS with Vitafiber-prebiotic 0.5 %w/v

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Vitafiber-prebiotic 0.5 %w/v
1,132,692	+		BBR_RS14975	0.39	-0.5
1,132,700	-		BBR_RS14975	0.40	-0.6
1,132,700	-		BBR_RS14975	0.40	+0.8
1,132,700	-		BBR_RS14975	0.40	+0.5
1,132,722	+		BBR_RS14975	0.41	+0.2
1,132,733	+		BBR_RS14975	0.42	-0.7
1,132,750	+		BBR_RS14975	0.43	-0.1
1,132,750	+		BBR_RS14975	0.43	-1.8
1,132,750	+		BBR_RS14975	0.43	+1.4
1,132,758	-		BBR_RS14975	0.44	+0.2
1,132,758	-		BBR_RS14975	0.44	+0.1
1,132,758	-		BBR_RS14975	0.44	+0.7
1,132,768	-		BBR_RS14975	0.45	+0.3
1,132,768	-		BBR_RS14975	0.45	-2.2
1,132,836	+		BBR_RS14975	0.50	+0.7
1,132,872	+		BBR_RS14975	0.52	-0.1
1,132,910	-		BBR_RS14975	0.55	-0.4
1,133,017	-		BBR_RS14975	0.63	+0.0
1,133,055	-		BBR_RS14975	0.66	+0.9
1,133,170	+		BBR_RS14975	0.74	+1.7
1,133,185	+		BBR_RS14975	0.75	+1.0
1,133,185	+		BBR_RS14975	0.75	-0.2
1,133,193	-		BBR_RS14975	0.76	-0.7
1,133,242	+		BBR_RS14975	0.79	-0.2
1,133,256	-		BBR_RS14975	0.80	+1.6
1,133,286	-		BBR_RS14975	0.83	-0.8
1,133,288	+		BBR_RS14975	0.83	-0.1
1,133,289	-		BBR_RS14975	0.83	-2.7
1,133,296	-		BBR_RS14975	0.83	+0.1
1,133,343	-		BBR_RS14975	0.87	+0.5
1,133,358	+		BBR_RS14975	0.88	-0.4
1,133,361	-		BBR_RS14975	0.88	-0.0
1,133,544	+				+0.8
1,133,564	-				-0.8
1,133,587	+				-0.2
1,133,587	-				+0.9
1,133,648	-				-0.2
1,133,673	-				+0.2
1,133,675	+				-0.8
1,133,675	+				+0.5
1,133,675	+				-0.0
1,133,675	+				-0.1
1,133,680	+				-0.3
1,133,683	-				+0.4
1,133,683	-				+0.0
1,133,683	-				-0.1
1,133,794	+		BBR_RS14980	0.21	+1.0
1,133,832	-		BBR_RS14980	0.28	-1.4
1,133,832	-		BBR_RS14980	0.28	+0.2
1,133,928	+		BBR_RS14980	0.44	+0.6
1,133,953	-		BBR_RS14980	0.49	-0.0
1,133,953	-		BBR_RS14980	0.49	-0.3
1,133,955	+		BBR_RS14980	0.49	-0.4
1,133,955	+		BBR_RS14980	0.49	-0.4
1,133,990	+		BBR_RS14980	0.55	-0.3
1,134,029	-		BBR_RS14980	0.62	-0.7
1,134,182	+		BBR_RS14980	0.88	-0.2
1,134,213	-				-0.3
1,134,231	-				+0.2
1,134,256	+				-0.2
1,134,259	+				-0.5
1,134,314	-				+0.2
1,134,420	-				+0.2
1,134,420	-				-1.9
1,134,425	-				+1.1
1,134,425	-				-0.2
1,134,441	+				-0.3