Experiment: 3 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3015 and DvMF_3016 overlap by 8 nucleotides DvMF_3016 and DvMF_3017 are separated by 103 nucleotides
DvMF_3015: DvMF_3015 - aminotransferase class I and II (RefSeq), at 3,804,076 to 3,805,347
_3015
DvMF_3016: DvMF_3016 - glycosyl transferase group 1 (RefSeq), at 3,805,340 to 3,806,461
_3016
DvMF_3017: DvMF_3017 - glycosyl transferase group 1 (RefSeq), at 3,806,565 to 3,807,647
_3017
Position (kb)
3805
3806
3807 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3804.362 kb on + strand, within DvMF_3015 at 3804.688 kb on + strand, within DvMF_3015 at 3804.779 kb on - strand, within DvMF_3015 at 3804.892 kb on - strand, within DvMF_3015 at 3804.914 kb on + strand, within DvMF_3015 at 3805.256 kb on + strand at 3805.490 kb on - strand, within DvMF_3016 at 3805.694 kb on - strand, within DvMF_3016 at 3805.737 kb on - strand, within DvMF_3016 at 3805.804 kb on - strand, within DvMF_3016 at 3805.857 kb on - strand, within DvMF_3016 at 3805.870 kb on + strand, within DvMF_3016 at 3805.892 kb on + strand, within DvMF_3016 at 3805.942 kb on - strand, within DvMF_3016 at 3806.139 kb on - strand, within DvMF_3016 at 3806.258 kb on - strand, within DvMF_3016 at 3806.304 kb on + strand, within DvMF_3016 at 3806.312 kb on - strand, within DvMF_3016 at 3806.312 kb on - strand, within DvMF_3016 at 3806.335 kb on + strand, within DvMF_3016 at 3806.343 kb on - strand, within DvMF_3016 at 3806.603 kb on + strand at 3806.665 kb on + strand at 3806.797 kb on + strand, within DvMF_3017 at 3806.797 kb on - strand, within DvMF_3017 at 3806.845 kb on + strand, within DvMF_3017 at 3806.869 kb on + strand, within DvMF_3017 at 3806.877 kb on - strand, within DvMF_3017 at 3806.877 kb on - strand, within DvMF_3017 at 3806.987 kb on + strand, within DvMF_3017 at 3807.196 kb on + strand, within DvMF_3017 at 3807.216 kb on + strand, within DvMF_3017
Per-strain Table
Position Strand Gene LocusTag Fraction 3 day starvation, 30C remove 3,804,362 + DvMF_3015 0.22 +0.1 3,804,688 + DvMF_3015 0.48 +0.1 3,804,779 - DvMF_3015 0.55 +1.3 3,804,892 - DvMF_3015 0.64 +0.1 3,804,914 + DvMF_3015 0.66 -0.1 3,805,256 + +0.2 3,805,490 - DvMF_3016 0.13 -1.0 3,805,694 - DvMF_3016 0.32 -2.9 3,805,737 - DvMF_3016 0.35 -1.1 3,805,804 - DvMF_3016 0.41 -2.1 3,805,857 - DvMF_3016 0.46 -1.7 3,805,870 + DvMF_3016 0.47 -2.4 3,805,892 + DvMF_3016 0.49 -2.1 3,805,942 - DvMF_3016 0.54 -2.4 3,806,139 - DvMF_3016 0.71 -0.9 3,806,258 - DvMF_3016 0.82 -3.8 3,806,304 + DvMF_3016 0.86 -2.5 3,806,312 - DvMF_3016 0.87 -2.3 3,806,312 - DvMF_3016 0.87 -3.4 3,806,335 + DvMF_3016 0.89 -0.5 3,806,343 - DvMF_3016 0.89 -2.2 3,806,603 + +0.8 3,806,665 + +0.9 3,806,797 + DvMF_3017 0.21 +1.0 3,806,797 - DvMF_3017 0.21 +0.8 3,806,845 + DvMF_3017 0.26 +1.2 3,806,869 + DvMF_3017 0.28 -1.1 3,806,877 - DvMF_3017 0.29 +0.5 3,806,877 - DvMF_3017 0.29 -0.1 3,806,987 + DvMF_3017 0.39 +0.9 3,807,196 + DvMF_3017 0.58 +0.4 3,807,216 + DvMF_3017 0.60 +1.6
Or see this region's nucleotide sequence