Experiment: 3 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2546 and DvMF_2547 are separated by 411 nucleotides DvMF_2547 and DvMF_2548 are separated by 52 nucleotides
DvMF_2546: DvMF_2546 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 3,217,923 to 3,218,381
_2546
DvMF_2547: DvMF_2547 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 3,218,793 to 3,219,587
_2547
DvMF_2548: DvMF_2548 - multi-sensor signal transduction histidine kinase (RefSeq), at 3,219,640 to 3,222,225
_2548
Position (kb)
3218
3219
3220 Strain fitness (log2 ratio)
-1
0
1 at 3217.888 kb on - strand at 3217.969 kb on + strand, within DvMF_2546 at 3217.987 kb on - strand, within DvMF_2546 at 3218.227 kb on + strand, within DvMF_2546 at 3218.303 kb on + strand, within DvMF_2546 at 3218.338 kb on - strand at 3218.893 kb on + strand, within DvMF_2547 at 3218.969 kb on - strand, within DvMF_2547 at 3218.988 kb on + strand, within DvMF_2547 at 3219.011 kb on - strand, within DvMF_2547 at 3219.486 kb on - strand, within DvMF_2547 at 3219.567 kb on + strand at 3219.699 kb on + strand at 3219.749 kb on + strand at 3219.814 kb on - strand at 3220.204 kb on - strand, within DvMF_2548 at 3220.249 kb on - strand, within DvMF_2548 at 3220.259 kb on + strand, within DvMF_2548 at 3220.259 kb on + strand, within DvMF_2548 at 3220.259 kb on + strand, within DvMF_2548 at 3220.267 kb on - strand, within DvMF_2548 at 3220.267 kb on - strand, within DvMF_2548 at 3220.267 kb on - strand, within DvMF_2548 at 3220.537 kb on - strand, within DvMF_2548
Per-strain Table
Position Strand Gene LocusTag Fraction 3 day starvation, 30C remove 3,217,888 - +0.1 3,217,969 + DvMF_2546 0.10 -0.2 3,217,987 - DvMF_2546 0.14 -0.4 3,218,227 + DvMF_2546 0.66 -0.2 3,218,303 + DvMF_2546 0.83 +0.1 3,218,338 - +0.5 3,218,893 + DvMF_2547 0.13 -0.9 3,218,969 - DvMF_2547 0.22 -1.3 3,218,988 + DvMF_2547 0.25 -1.0 3,219,011 - DvMF_2547 0.27 -1.2 3,219,486 - DvMF_2547 0.87 -0.9 3,219,567 + -0.3 3,219,699 + +0.2 3,219,749 + +0.7 3,219,814 - +0.7 3,220,204 - DvMF_2548 0.22 +0.6 3,220,249 - DvMF_2548 0.24 +0.2 3,220,259 + DvMF_2548 0.24 -0.5 3,220,259 + DvMF_2548 0.24 -0.2 3,220,259 + DvMF_2548 0.24 +0.1 3,220,267 - DvMF_2548 0.24 -0.1 3,220,267 - DvMF_2548 0.24 -0.2 3,220,267 - DvMF_2548 0.24 +1.1 3,220,537 - DvMF_2548 0.35 -0.1
Or see this region's nucleotide sequence