Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2546

Experiment: 3 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2545 and DvMF_2546 are separated by 269 nucleotidesDvMF_2546 and DvMF_2547 are separated by 411 nucleotides DvMF_2545: DvMF_2545 - metal dependent phosphohydrolase (RefSeq), at 3,216,844 to 3,217,653 _2545 DvMF_2546: DvMF_2546 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 3,217,923 to 3,218,381 _2546 DvMF_2547: DvMF_2547 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 3,218,793 to 3,219,587 _2547 Position (kb) 3217 3218 3219Strain fitness (log2 ratio) -1 0 1at 3216.930 kb on - strand, within DvMF_2545at 3217.027 kb on + strand, within DvMF_2545at 3217.103 kb on + strand, within DvMF_2545at 3217.120 kb on + strand, within DvMF_2545at 3217.120 kb on + strand, within DvMF_2545at 3217.888 kb on - strandat 3217.969 kb on + strand, within DvMF_2546at 3217.987 kb on - strand, within DvMF_2546at 3218.227 kb on + strand, within DvMF_2546at 3218.303 kb on + strand, within DvMF_2546at 3218.338 kb on - strandat 3218.893 kb on + strand, within DvMF_2547at 3218.969 kb on - strand, within DvMF_2547at 3218.988 kb on + strand, within DvMF_2547at 3219.011 kb on - strand, within DvMF_2547

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Per-strain Table

Position Strand Gene LocusTag Fraction 3 day starvation, 30C
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3,216,930 - DvMF_2545 0.11 -0.0
3,217,027 + DvMF_2545 0.23 -0.1
3,217,103 + DvMF_2545 0.32 +0.4
3,217,120 + DvMF_2545 0.34 -0.1
3,217,120 + DvMF_2545 0.34 +0.2
3,217,888 - +0.1
3,217,969 + DvMF_2546 0.10 -0.2
3,217,987 - DvMF_2546 0.14 -0.4
3,218,227 + DvMF_2546 0.66 -0.2
3,218,303 + DvMF_2546 0.83 +0.1
3,218,338 - +0.5
3,218,893 + DvMF_2547 0.13 -0.9
3,218,969 - DvMF_2547 0.22 -1.3
3,218,988 + DvMF_2547 0.25 -1.0
3,219,011 - DvMF_2547 0.27 -1.2

Or see this region's nucleotide sequence