Experiment: 3 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2537 and DvMF_2538 are separated by 342 nucleotides DvMF_2538 and DvMF_2539 are separated by 296 nucleotides DvMF_2539 and DvMF_2540 are separated by 56 nucleotides DvMF_2540 and DvMF_2541 are separated by 134 nucleotides
DvMF_2537: DvMF_2537 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 3,202,729 to 3,206,397
_2537
DvMF_2538: DvMF_2538 - hypothetical protein (RefSeq), at 3,206,740 to 3,207,027
_2538
DvMF_2539: DvMF_2539 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,207,324 to 3,209,369
_2539
DvMF_2540: DvMF_2540 - response regulator receiver protein (RefSeq), at 3,209,426 to 3,209,878
_2540
DvMF_2541: DvMF_2541 - multi-sensor signal transduction histidine kinase (RefSeq), at 3,210,013 to 3,212,637
_2541
Position (kb)
3207
3208
3209
3210 Strain fitness (log2 ratio)
-1
0
1 at 3206.361 kb on + strand at 3206.834 kb on + strand, within DvMF_2538 at 3206.837 kb on - strand, within DvMF_2538 at 3206.881 kb on - strand, within DvMF_2538 at 3206.918 kb on + strand, within DvMF_2538 at 3207.062 kb on - strand at 3207.082 kb on + strand at 3207.178 kb on - strand at 3207.192 kb on + strand at 3207.200 kb on - strand at 3207.363 kb on - strand at 3207.443 kb on + strand at 3207.451 kb on - strand at 3207.451 kb on - strand at 3207.458 kb on - strand at 3207.604 kb on + strand, within DvMF_2539 at 3207.691 kb on - strand, within DvMF_2539 at 3207.885 kb on - strand, within DvMF_2539 at 3207.926 kb on + strand, within DvMF_2539 at 3207.934 kb on - strand, within DvMF_2539 at 3208.065 kb on + strand, within DvMF_2539 at 3208.071 kb on + strand, within DvMF_2539 at 3208.144 kb on + strand, within DvMF_2539 at 3208.330 kb on - strand, within DvMF_2539 at 3208.552 kb on + strand, within DvMF_2539 at 3208.552 kb on + strand, within DvMF_2539 at 3208.560 kb on - strand, within DvMF_2539 at 3208.570 kb on + strand, within DvMF_2539 at 3208.730 kb on - strand, within DvMF_2539 at 3208.758 kb on + strand, within DvMF_2539 at 3208.795 kb on + strand, within DvMF_2539 at 3209.205 kb on - strand at 3209.256 kb on + strand at 3209.267 kb on + strand at 3209.267 kb on + strand at 3209.334 kb on - strand at 3209.334 kb on - strand at 3209.406 kb on + strand at 3209.443 kb on + strand at 3209.685 kb on + strand, within DvMF_2540 at 3209.754 kb on + strand, within DvMF_2540 at 3209.754 kb on + strand, within DvMF_2540 at 3209.762 kb on - strand, within DvMF_2540 at 3210.100 kb on - strand at 3210.140 kb on + strand at 3210.227 kb on + strand at 3210.316 kb on + strand, within DvMF_2541
Per-strain Table
Position Strand Gene LocusTag Fraction 3 day starvation, 30C remove 3,206,361 + -0.9 3,206,834 + DvMF_2538 0.33 +0.2 3,206,837 - DvMF_2538 0.34 +0.3 3,206,881 - DvMF_2538 0.49 -0.7 3,206,918 + DvMF_2538 0.62 -0.2 3,207,062 - +1.3 3,207,082 + -0.1 3,207,178 - +0.2 3,207,192 + +0.3 3,207,200 - +0.5 3,207,363 - +0.4 3,207,443 + -0.2 3,207,451 - +0.8 3,207,451 - +0.5 3,207,458 - +0.8 3,207,604 + DvMF_2539 0.14 -0.1 3,207,691 - DvMF_2539 0.18 -0.4 3,207,885 - DvMF_2539 0.27 -0.5 3,207,926 + DvMF_2539 0.29 -0.3 3,207,934 - DvMF_2539 0.30 -0.2 3,208,065 + DvMF_2539 0.36 -1.0 3,208,071 + DvMF_2539 0.37 +1.1 3,208,144 + DvMF_2539 0.40 +0.3 3,208,330 - DvMF_2539 0.49 -0.1 3,208,552 + DvMF_2539 0.60 +0.7 3,208,552 + DvMF_2539 0.60 +0.6 3,208,560 - DvMF_2539 0.60 +0.0 3,208,570 + DvMF_2539 0.61 -0.8 3,208,730 - DvMF_2539 0.69 +0.1 3,208,758 + DvMF_2539 0.70 -0.6 3,208,795 + DvMF_2539 0.72 +0.6 3,209,205 - +0.3 3,209,256 + -0.2 3,209,267 + +0.3 3,209,267 + -0.2 3,209,334 - +0.1 3,209,334 - +0.4 3,209,406 + +0.1 3,209,443 + -0.4 3,209,685 + DvMF_2540 0.57 -0.6 3,209,754 + DvMF_2540 0.72 -0.4 3,209,754 + DvMF_2540 0.72 -0.1 3,209,762 - DvMF_2540 0.74 -0.0 3,210,100 - +0.5 3,210,140 + +0.2 3,210,227 + -0.7 3,210,316 + DvMF_2541 0.12 -0.2
Or see this region's nucleotide sequence