Experiment: 3 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt engA and DvMF_2264 are separated by 550 nucleotides DvMF_2264 and DvMF_2265 are separated by 142 nucleotides
DvMF_2263: engA - GTP-binding protein EngA (RefSeq), at 2,842,497 to 2,844,017
engA
DvMF_2264: DvMF_2264 - DNA binding domain protein, excisionase family (RefSeq), at 2,844,568 to 2,845,554
_2264
DvMF_2265: DvMF_2265 - transcriptional regulator, MarR family (RefSeq), at 2,845,697 to 2,846,587
_2265
Position (kb)
2844
2845
2846 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2844.086 kb on - strand at 2844.091 kb on - strand at 2844.118 kb on - strand at 2844.122 kb on + strand at 2844.692 kb on - strand, within DvMF_2264 at 2844.828 kb on - strand, within DvMF_2264 at 2844.840 kb on + strand, within DvMF_2264 at 2844.918 kb on - strand, within DvMF_2264 at 2844.943 kb on - strand, within DvMF_2264 at 2844.944 kb on - strand, within DvMF_2264 at 2845.101 kb on + strand, within DvMF_2264 at 2845.125 kb on + strand, within DvMF_2264 at 2845.125 kb on + strand, within DvMF_2264 at 2845.125 kb on + strand, within DvMF_2264 at 2845.133 kb on - strand, within DvMF_2264 at 2845.276 kb on - strand, within DvMF_2264 at 2845.376 kb on + strand, within DvMF_2264 at 2845.501 kb on + strand at 2845.604 kb on - strand at 2845.678 kb on + strand at 2845.720 kb on + strand at 2845.952 kb on + strand, within DvMF_2265 at 2845.952 kb on + strand, within DvMF_2265 at 2845.971 kb on - strand, within DvMF_2265
Per-strain Table
Position Strand Gene LocusTag Fraction 3 day starvation, 30C remove 2,844,086 - +0.5 2,844,091 - +0.4 2,844,118 - +0.8 2,844,122 + -1.4 2,844,692 - DvMF_2264 0.13 +1.5 2,844,828 - DvMF_2264 0.26 +0.5 2,844,840 + DvMF_2264 0.28 +0.3 2,844,918 - DvMF_2264 0.35 +0.4 2,844,943 - DvMF_2264 0.38 +0.2 2,844,944 - DvMF_2264 0.38 +0.1 2,845,101 + DvMF_2264 0.54 +0.5 2,845,125 + DvMF_2264 0.56 +0.3 2,845,125 + DvMF_2264 0.56 +0.1 2,845,125 + DvMF_2264 0.56 +0.4 2,845,133 - DvMF_2264 0.57 -0.5 2,845,276 - DvMF_2264 0.72 +0.5 2,845,376 + DvMF_2264 0.82 +0.4 2,845,501 + +0.9 2,845,604 - +0.5 2,845,678 + -0.6 2,845,720 + -1.5 2,845,952 + DvMF_2265 0.29 -1.2 2,845,952 + DvMF_2265 0.29 -2.5 2,845,971 - DvMF_2265 0.31 -2.9
Or see this region's nucleotide sequence