Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2262

Experiment: 3 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2261 and DvMF_2262 are separated by 139 nucleotidesDvMF_2262 and engA are separated by 280 nucleotides DvMF_2261: DvMF_2261 - hypothetical protein (RefSeq), at 2,840,113 to 2,841,198 _2261 DvMF_2262: DvMF_2262 - hypothetical protein (RefSeq), at 2,841,338 to 2,842,216 _2262 DvMF_2263: engA - GTP-binding protein EngA (RefSeq), at 2,842,497 to 2,844,017 engA Position (kb) 2841 2842 2843Strain fitness (log2 ratio) -1 0 1at 2840.509 kb on - strand, within DvMF_2261at 2840.811 kb on + strand, within DvMF_2261at 2840.843 kb on + strand, within DvMF_2261at 2840.993 kb on - strand, within DvMF_2261at 2841.168 kb on - strandat 2841.205 kb on + strandat 2841.269 kb on - strandat 2841.320 kb on - strandat 2841.446 kb on - strand, within DvMF_2262at 2841.512 kb on + strand, within DvMF_2262at 2841.613 kb on + strand, within DvMF_2262at 2841.621 kb on - strand, within DvMF_2262at 2841.699 kb on - strand, within DvMF_2262at 2841.754 kb on + strand, within DvMF_2262at 2841.754 kb on + strand, within DvMF_2262at 2841.754 kb on + strand, within DvMF_2262at 2841.754 kb on + strand, within DvMF_2262at 2841.762 kb on - strand, within DvMF_2262at 2841.762 kb on - strand, within DvMF_2262at 2841.813 kb on + strand, within DvMF_2262at 2841.939 kb on - strand, within DvMF_2262at 2842.002 kb on - strand, within DvMF_2262at 2842.369 kb on - strandat 2842.429 kb on + strandat 2842.484 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3 day starvation, 30C
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2,840,509 - DvMF_2261 0.36 +0.2
2,840,811 + DvMF_2261 0.64 +0.3
2,840,843 + DvMF_2261 0.67 +0.4
2,840,993 - DvMF_2261 0.81 +1.0
2,841,168 - +0.2
2,841,205 + +0.0
2,841,269 - +0.3
2,841,320 - +1.2
2,841,446 - DvMF_2262 0.12 +0.5
2,841,512 + DvMF_2262 0.20 +0.3
2,841,613 + DvMF_2262 0.31 +0.3
2,841,621 - DvMF_2262 0.32 -0.2
2,841,699 - DvMF_2262 0.41 +0.4
2,841,754 + DvMF_2262 0.47 +0.5
2,841,754 + DvMF_2262 0.47 +0.2
2,841,754 + DvMF_2262 0.47 +0.3
2,841,754 + DvMF_2262 0.47 +0.3
2,841,762 - DvMF_2262 0.48 -0.2
2,841,762 - DvMF_2262 0.48 +0.1
2,841,813 + DvMF_2262 0.54 +1.3
2,841,939 - DvMF_2262 0.68 +0.2
2,842,002 - DvMF_2262 0.76 +0.2
2,842,369 - -0.5
2,842,429 + +1.2
2,842,484 + +0.7

Or see this region's nucleotide sequence