Experiment: 3 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2222 and DvMF_2223 are separated by 263 nucleotides DvMF_2223 and DvMF_R0061 are separated by 112 nucleotides DvMF_R0061 and DvMF_2224 are separated by 97 nucleotides DvMF_2224 and DvMF_2225 are separated by 446 nucleotides
DvMF_2222: DvMF_2222 - protein of unknown function DUF214 (RefSeq), at 2,781,487 to 2,784,294
_2222
DvMF_2223: DvMF_2223 - diacylglycerol kinase (RefSeq), at 2,784,558 to 2,784,920
_2223
DvMF_R0061: DvMF_R0061 - tRNA-Lys (RefSeq), at 2,785,033 to 2,785,108
_R0061
DvMF_2224: DvMF_2224 - seryl-tRNA synthetase (RefSeq), at 2,785,206 to 2,786,483
_2224
DvMF_2225: DvMF_2225 - hypothetical protein (RefSeq), at 2,786,930 to 2,787,349
_2225
Position (kb)
2785
2786
2787 Strain fitness (log2 ratio)
-1
0
1 at 2784.222 kb on - strand at 2784.369 kb on - strand at 2784.503 kb on + strand at 2784.555 kb on + strand at 2786.203 kb on + strand, within DvMF_2224 at 2786.918 kb on + strand at 2786.968 kb on + strand at 2786.976 kb on - strand, within DvMF_2225 at 2787.260 kb on - strand, within DvMF_2225
Per-strain Table
Position Strand Gene LocusTag Fraction 3 day starvation, 30C remove 2,784,222 - +1.2 2,784,369 - +0.4 2,784,503 + +0.6 2,784,555 + +1.0 2,786,203 + DvMF_2224 0.78 +1.2 2,786,918 + -0.5 2,786,968 + -0.1 2,786,976 - DvMF_2225 0.11 +0.3 2,787,260 - DvMF_2225 0.79 +0.2
Or see this region's nucleotide sequence