Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0836

Experiment: 3 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0835 and DvMF_0836 are separated by 23 nucleotidesDvMF_0836 and DvMF_0837 are separated by 3 nucleotides DvMF_0835: DvMF_0835 - Beta-N-acetylhexosaminidase (RefSeq), at 1,007,571 to 1,009,331 _0835 DvMF_0836: DvMF_0836 - Hydantoinase/oxoprolinase (RefSeq), at 1,009,355 to 1,011,106 _0836 DvMF_0837: DvMF_0837 - 4-hydroxythreonine-4-phosphate dehydrogenase (RefSeq), at 1,011,110 to 1,012,198 _0837 Position (kb) 1009 1010 1011 1012Strain fitness (log2 ratio) -2 -1 0 1at 1008.382 kb on - strand, within DvMF_0835at 1008.656 kb on - strand, within DvMF_0835at 1008.680 kb on - strand, within DvMF_0835at 1008.977 kb on - strand, within DvMF_0835at 1008.993 kb on + strand, within DvMF_0835at 1009.272 kb on - strandat 1009.381 kb on + strandat 1009.415 kb on - strandat 1009.758 kb on + strand, within DvMF_0836at 1009.771 kb on - strand, within DvMF_0836at 1009.809 kb on + strand, within DvMF_0836at 1009.842 kb on - strand, within DvMF_0836at 1009.865 kb on + strand, within DvMF_0836at 1009.873 kb on - strand, within DvMF_0836at 1010.223 kb on - strand, within DvMF_0836at 1010.331 kb on - strand, within DvMF_0836at 1010.331 kb on - strand, within DvMF_0836at 1010.444 kb on - strand, within DvMF_0836at 1010.467 kb on + strand, within DvMF_0836at 1011.138 kb on - strandat 1011.398 kb on - strand, within DvMF_0837at 1011.737 kb on - strand, within DvMF_0837

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Per-strain Table

Position Strand Gene LocusTag Fraction 3 day starvation, 30C
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1,008,382 - DvMF_0835 0.46 +0.2
1,008,656 - DvMF_0835 0.62 +0.9
1,008,680 - DvMF_0835 0.63 +1.1
1,008,977 - DvMF_0835 0.80 +0.7
1,008,993 + DvMF_0835 0.81 +0.5
1,009,272 - +0.3
1,009,381 + +0.6
1,009,415 - +0.4
1,009,758 + DvMF_0836 0.23 -2.2
1,009,771 - DvMF_0836 0.24 -0.7
1,009,809 + DvMF_0836 0.26 -1.1
1,009,842 - DvMF_0836 0.28 -1.8
1,009,865 + DvMF_0836 0.29 -1.1
1,009,873 - DvMF_0836 0.30 -0.3
1,010,223 - DvMF_0836 0.50 -0.9
1,010,331 - DvMF_0836 0.56 -1.5
1,010,331 - DvMF_0836 0.56 -1.0
1,010,444 - DvMF_0836 0.62 -0.7
1,010,467 + DvMF_0836 0.63 -0.9
1,011,138 - -0.5
1,011,398 - DvMF_0837 0.26 +0.5
1,011,737 - DvMF_0837 0.58 +0.6

Or see this region's nucleotide sequence