Experiment: 3 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0817 and DvMF_0818 are separated by 108 nucleotides DvMF_0818 and DvMF_0819 are separated by 115 nucleotides DvMF_0819 and DvMF_0820 overlap by 11 nucleotides DvMF_0820 and DvMF_0821 are separated by 138 nucleotides
DvMF_0817: DvMF_0817 - Biotin carboxylase (RefSeq), at 985,648 to 987,066
_0817
DvMF_0818: DvMF_0818 - type IV pilus assembly PilZ (RefSeq), at 987,175 to 987,705
_0818
DvMF_0819: DvMF_0819 - OmpA/MotB domain protein (RefSeq), at 987,821 to 988,555
_0819
DvMF_0820: DvMF_0820 - MotA/TolQ/ExbB proton channel (RefSeq), at 988,545 to 989,300
_0820
DvMF_0821: DvMF_0821 - purine nucleoside phosphorylase (RefSeq), at 989,439 to 990,284
_0821
Position (kb) 987
988
989 Strain fitness (log2 ratio) -1
0
1 at 987.179 kb on - strand at 987.323 kb on + strand, within DvMF_0818 at 987.428 kb on + strand, within DvMF_0818 at 987.538 kb on + strand, within DvMF_0818 at 987.740 kb on - strand at 988.279 kb on - strand, within DvMF_0819 at 988.295 kb on - strand, within DvMF_0819 at 988.435 kb on + strand, within DvMF_0819 at 988.720 kb on + strand, within DvMF_0820 at 989.240 kb on + strand at 989.243 kb on - strand at 989.546 kb on - strand, within DvMF_0821
Per-strain Table
Position Strand Gene LocusTag Fraction 3 day starvation, 30C remove 987,179 - +0.2 987,323 + DvMF_0818 0.28 -0.4 987,428 + DvMF_0818 0.48 -0.0 987,538 + DvMF_0818 0.68 +0.0 987,740 - +1.0 988,279 - DvMF_0819 0.62 +1.7 988,295 - DvMF_0819 0.64 -0.0 988,435 + DvMF_0819 0.84 +0.8 988,720 + DvMF_0820 0.23 +0.7 989,240 + +0.9 989,243 - +0.0 989,546 - DvMF_0821 0.13 -0.1
Or see this region's nucleotide sequence