Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0384

Experiment: 3 day starvation, 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntgreA and DvMF_0384 are separated by 424 nucleotidesDvMF_0384 and DvMF_0385 are separated by 126 nucleotidesDvMF_0385 and DvMF_0386 are separated by 263 nucleotides DvMF_0383: greA - transcription elongation factor GreA (RefSeq), at 451,151 to 451,633 greA DvMF_0384: DvMF_0384 - hypothetical protein (RefSeq), at 452,058 to 452,252 _0384 DvMF_0385: DvMF_0385 - hypothetical protein (RefSeq), at 452,379 to 452,804 _0385 DvMF_0386: DvMF_0386 - hypothetical protein (RefSeq), at 453,068 to 453,691 _0386 Position (kb) 452 453Strain fitness (log2 ratio) -1 0 1at 451.245 kb on - strand, within greAat 451.427 kb on + strand, within greAat 451.429 kb on - strand, within greAat 451.429 kb on - strand, within greAat 451.429 kb on - strand, within greAat 451.598 kb on + strandat 451.717 kb on + strandat 451.862 kb on - strandat 451.898 kb on + strandat 452.605 kb on + strand, within DvMF_0385at 452.634 kb on + strand, within DvMF_0385at 452.650 kb on - strand, within DvMF_0385at 452.695 kb on - strand, within DvMF_0385at 452.735 kb on + strand, within DvMF_0385at 452.953 kb on + strandat 452.979 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3 day starvation, 30C
remove
451,245 - greA DvMF_0383 0.19 +0.2
451,427 + greA DvMF_0383 0.57 -0.1
451,429 - greA DvMF_0383 0.58 -0.8
451,429 - greA DvMF_0383 0.58 -0.2
451,429 - greA DvMF_0383 0.58 +0.5
451,598 + +0.5
451,717 + +1.3
451,862 - +0.5
451,898 + +0.1
452,605 + DvMF_0385 0.53 -0.5
452,634 + DvMF_0385 0.60 +0.2
452,650 - DvMF_0385 0.64 +0.5
452,695 - DvMF_0385 0.74 +0.4
452,735 + DvMF_0385 0.84 +0.5
452,953 + +0.4
452,979 + +0.6

Or see this region's nucleotide sequence