Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0328

Experiment: 3 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0327 and DvMF_0328 are separated by 295 nucleotidesDvMF_0328 and DvMF_0329 are separated by 264 nucleotides DvMF_0327: DvMF_0327 - oxidoreductase FAD/NAD(P)-binding domain protein (RefSeq), at 381,585 to 382,472 _0327 DvMF_0328: DvMF_0328 - hypothetical protein (RefSeq), at 382,768 to 383,256 _0328 DvMF_0329: DvMF_0329 - hypothetical protein (RefSeq), at 383,521 to 384,408 _0329 Position (kb) 382 383 384Strain fitness (log2 ratio) -2 -1 0 1at 381.910 kb on - strand, within DvMF_0327at 382.074 kb on + strand, within DvMF_0327at 382.198 kb on + strand, within DvMF_0327at 382.731 kb on - strandat 383.032 kb on + strand, within DvMF_0328at 383.318 kb on - strandat 383.470 kb on + strandat 383.551 kb on + strandat 383.559 kb on - strandat 383.559 kb on - strandat 383.559 kb on - strandat 384.053 kb on + strand, within DvMF_0329at 384.061 kb on - strand, within DvMF_0329at 384.061 kb on - strand, within DvMF_0329at 384.159 kb on + strand, within DvMF_0329at 384.209 kb on + strand, within DvMF_0329

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Per-strain Table

Position Strand Gene LocusTag Fraction 3 day starvation, 30C
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381,910 - DvMF_0327 0.37 -1.9
382,074 + DvMF_0327 0.55 -1.7
382,198 + DvMF_0327 0.69 -2.1
382,731 - -0.6
383,032 + DvMF_0328 0.54 +0.5
383,318 - -0.0
383,470 + +0.9
383,551 + -0.3
383,559 - +0.8
383,559 - +0.2
383,559 - +0.9
384,053 + DvMF_0329 0.60 +0.4
384,061 - DvMF_0329 0.61 +1.7
384,061 - DvMF_0329 0.61 -0.4
384,159 + DvMF_0329 0.72 +0.5
384,209 + DvMF_0329 0.77 +0.8

Or see this region's nucleotide sequence