Experiment: m.b. Nalidixic 0.048 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2914 and Dshi_2915 are separated by 75 nucleotides Dshi_2915 and Dshi_2916 overlap by 4 nucleotides Dshi_2916 and Dshi_2917 are separated by 250 nucleotides
Dshi_2914: Dshi_2914 - lipase, putative (RefSeq), at 3,072,942 to 3,073,709
_2914
Dshi_2915: Dshi_2915 - NUDIX hydrolase (RefSeq), at 3,073,785 to 3,074,231
_2915
Dshi_2916: Dshi_2916 - protein of unknown function DUF6 transmembrane (RefSeq), at 3,074,228 to 3,075,076
_2916
Dshi_2917: Dshi_2917 - amidohydrolase (RefSeq), at 3,075,327 to 3,076,484
_2917
Position (kb)
3074
3075
3076 Strain fitness (log2 ratio)
-2
-1
0
1 at 3073.269 kb on + strand at 3073.516 kb on + strand, within Dshi_2914 at 3073.562 kb on + strand, within Dshi_2914 at 3073.623 kb on - strand, within Dshi_2914 at 3073.781 kb on + strand at 3073.802 kb on - strand at 3073.802 kb on - strand at 3073.843 kb on - strand, within Dshi_2915 at 3073.893 kb on - strand, within Dshi_2915 at 3074.023 kb on + strand, within Dshi_2915 at 3074.055 kb on + strand, within Dshi_2915 at 3074.086 kb on + strand, within Dshi_2915 at 3074.248 kb on + strand at 3074.415 kb on - strand, within Dshi_2916 at 3074.465 kb on - strand, within Dshi_2916 at 3074.473 kb on + strand, within Dshi_2916 at 3074.605 kb on - strand, within Dshi_2916 at 3074.645 kb on + strand, within Dshi_2916 at 3074.777 kb on - strand, within Dshi_2916 at 3074.842 kb on + strand, within Dshi_2916 at 3074.850 kb on - strand, within Dshi_2916 at 3074.850 kb on - strand, within Dshi_2916 at 3074.981 kb on + strand, within Dshi_2916 at 3074.989 kb on - strand, within Dshi_2916 at 3075.009 kb on - strand at 3075.050 kb on - strand at 3075.061 kb on + strand at 3075.148 kb on + strand at 3075.171 kb on - strand at 3075.279 kb on - strand at 3075.320 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.048 mg/ml remove 3,073,269 + -0.3 3,073,516 + Dshi_2914 0.75 -0.8 3,073,562 + Dshi_2914 0.81 -0.9 3,073,623 - Dshi_2914 0.89 -1.8 3,073,781 + +0.1 3,073,802 - +0.4 3,073,802 - +0.2 3,073,843 - Dshi_2915 0.13 -0.0 3,073,893 - Dshi_2915 0.24 -1.1 3,074,023 + Dshi_2915 0.53 +0.4 3,074,055 + Dshi_2915 0.60 -1.0 3,074,086 + Dshi_2915 0.67 -0.7 3,074,248 + -0.6 3,074,415 - Dshi_2916 0.22 -1.1 3,074,465 - Dshi_2916 0.28 -0.0 3,074,473 + Dshi_2916 0.29 -1.7 3,074,605 - Dshi_2916 0.44 -1.4 3,074,645 + Dshi_2916 0.49 +0.3 3,074,777 - Dshi_2916 0.65 -1.6 3,074,842 + Dshi_2916 0.72 -1.8 3,074,850 - Dshi_2916 0.73 -0.9 3,074,850 - Dshi_2916 0.73 -0.3 3,074,981 + Dshi_2916 0.89 -0.6 3,074,989 - Dshi_2916 0.90 -1.1 3,075,009 - -1.4 3,075,050 - +1.2 3,075,061 + +0.9 3,075,148 + -0.1 3,075,171 - -0.6 3,075,279 - -0.1 3,075,320 + +0.6
Or see this region's nucleotide sequence