Experiment: m.b. Nalidixic 0.048 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2631 and Dshi_2632 are separated by 166 nucleotides Dshi_2632 and Dshi_2633 are separated by 50 nucleotides Dshi_2633 and Dshi_2634 are separated by 99 nucleotides Dshi_2634 and Dshi_2635 are separated by 27 nucleotides
Dshi_2631: Dshi_2631 - response regulator receiver protein (RefSeq), at 2,787,540 to 2,788,244
_2631
Dshi_2632: Dshi_2632 - hypothetical protein (RefSeq), at 2,788,411 to 2,788,605
_2632
Dshi_2633: Dshi_2633 - aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) (from data) , at 2,788,656 to 2,790,428
_2633
Dshi_2634: Dshi_2634 - hypothetical protein (RefSeq), at 2,790,528 to 2,790,977
_2634
Dshi_2635: Dshi_2635 - pentapeptide repeat protein (RefSeq), at 2,791,005 to 2,791,742
_2635
Position (kb)
2788
2789
2790
2791 Strain fitness (log2 ratio)
-2
-1
0
1 at 2787.765 kb on - strand, within Dshi_2631 at 2787.863 kb on + strand, within Dshi_2631 at 2787.920 kb on + strand, within Dshi_2631 at 2788.019 kb on - strand, within Dshi_2631 at 2788.036 kb on - strand, within Dshi_2631 at 2788.066 kb on + strand, within Dshi_2631 at 2788.093 kb on - strand, within Dshi_2631 at 2788.385 kb on + strand at 2788.553 kb on + strand, within Dshi_2632 at 2788.578 kb on + strand, within Dshi_2632 at 2790.507 kb on - strand at 2790.527 kb on - strand at 2790.528 kb on - strand at 2790.528 kb on - strand at 2790.782 kb on + strand, within Dshi_2634 at 2790.782 kb on + strand, within Dshi_2634 at 2790.790 kb on - strand, within Dshi_2634 at 2790.790 kb on - strand, within Dshi_2634 at 2790.796 kb on + strand, within Dshi_2634 at 2790.821 kb on + strand, within Dshi_2634 at 2790.834 kb on - strand, within Dshi_2634 at 2790.987 kb on - strand at 2791.002 kb on + strand at 2791.035 kb on - strand at 2791.055 kb on - strand at 2791.129 kb on - strand, within Dshi_2635 at 2791.256 kb on + strand, within Dshi_2635 at 2791.296 kb on + strand, within Dshi_2635 at 2791.296 kb on + strand, within Dshi_2635 at 2791.296 kb on + strand, within Dshi_2635 at 2791.311 kb on - strand, within Dshi_2635 at 2791.311 kb on - strand, within Dshi_2635 at 2791.362 kb on - strand, within Dshi_2635
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.048 mg/ml remove 2,787,765 - Dshi_2631 0.32 -2.5 2,787,863 + Dshi_2631 0.46 -1.6 2,787,920 + Dshi_2631 0.54 +0.8 2,788,019 - Dshi_2631 0.68 -1.5 2,788,036 - Dshi_2631 0.70 -0.1 2,788,066 + Dshi_2631 0.75 -1.4 2,788,093 - Dshi_2631 0.78 -1.9 2,788,385 + +0.6 2,788,553 + Dshi_2632 0.73 -0.3 2,788,578 + Dshi_2632 0.86 +0.4 2,790,507 - +0.5 2,790,527 - -0.2 2,790,528 - +0.4 2,790,528 - +0.2 2,790,782 + Dshi_2634 0.56 -0.3 2,790,782 + Dshi_2634 0.56 +0.4 2,790,790 - Dshi_2634 0.58 -0.6 2,790,790 - Dshi_2634 0.58 -1.2 2,790,796 + Dshi_2634 0.60 +0.1 2,790,821 + Dshi_2634 0.65 +0.3 2,790,834 - Dshi_2634 0.68 -0.8 2,790,987 - +1.2 2,791,002 + -1.3 2,791,035 - -0.6 2,791,055 - -0.5 2,791,129 - Dshi_2635 0.17 +0.8 2,791,256 + Dshi_2635 0.34 -1.0 2,791,296 + Dshi_2635 0.39 +0.8 2,791,296 + Dshi_2635 0.39 +0.1 2,791,296 + Dshi_2635 0.39 -1.2 2,791,311 - Dshi_2635 0.41 -0.3 2,791,311 - Dshi_2635 0.41 -0.5 2,791,362 - Dshi_2635 0.48 -0.7
Or see this region's nucleotide sequence