Experiment: m.b. Nalidixic 0.048 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1797 and Dshi_1798 are separated by 183 nucleotides Dshi_1798 and Dshi_1799 overlap by 4 nucleotides Dshi_1799 and Dshi_1800 overlap by 4 nucleotides Dshi_1800 and Dshi_1801 overlap by 4 nucleotides
Dshi_1797: Dshi_1797 - protein of unknown function DUF610, YibQ (RefSeq), at 1,868,767 to 1,870,593
_1797
Dshi_1798: Dshi_1798 - glutamine amidotransferase of anthranilate synthase (RefSeq), at 1,870,777 to 1,871,382
_1798
Dshi_1799: Dshi_1799 - anthranilate phosphoribosyltransferase (RefSeq), at 1,871,379 to 1,872,398
_1799
Dshi_1800: Dshi_1800 - Indole-3-glycerol-phosphate synthase (RefSeq), at 1,872,395 to 1,873,210
_1800
Dshi_1801: Dshi_1801 - molybdenum cofactor biosynthesis protein C (RefSeq), at 1,873,207 to 1,873,683
_1801
Position (kb)
1871
1872
1873 Strain fitness (log2 ratio)
-1
0
1 at 1870.559 kb on + strand at 1870.567 kb on - strand at 1870.576 kb on + strand at 1870.582 kb on + strand at 1870.599 kb on + strand at 1870.720 kb on + strand at 1870.720 kb on + strand at 1870.728 kb on - strand at 1873.192 kb on + strand at 1873.269 kb on + strand, within Dshi_1801 at 1873.335 kb on + strand, within Dshi_1801
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.048 mg/ml remove 1,870,559 + -0.5 1,870,567 - -0.5 1,870,576 + -0.7 1,870,582 + -0.7 1,870,599 + -0.6 1,870,720 + +0.4 1,870,720 + +0.8 1,870,728 - -0.7 1,873,192 + -1.0 1,873,269 + Dshi_1801 0.13 +0.6 1,873,335 + Dshi_1801 0.27 +0.0
Or see this region's nucleotide sequence